RNAprotDB

All interfaces > All interologs > Interface groups > group95 > 5BZ1_A_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

5BZ1_A
5BZ1_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:222 [GLN] B:10 [A] 2.82 sugar:SC 97.01
A:225 [CYS] B:10 [A] 4.42 95.84
A:226 [ARG] B:10 [A] 3.06 sugar:SC base/AA stacks 96.95
A:229 [GLN] B:10 [A] 2.82 base:SC, base:SC 98.29
A:260 [PRO] B:9 [U] 3.82 85.06
A:260 [PRO] B:10 [A] 4.75 85.06
A:261 [PHE] B:10 [A] 3.66 90.13
A:263 [ASN] B:9 [U] 2.73 base:SC, base:SC 97.58
A:264 [TYR] B:9 [U] 3.08 base/AA stacks 96.3
A:264 [TYR] B:10 [A] 3.32 base/AA stacks 96.3
A:267 [GLN] B:9 [U] 2.82 base:SC 97.69
A:297 [TYR] B:9 [U] 3.11 94.11
A:299 [THR] B:7 [U] 3.88 97.83
A:300 [ARG] B:7 [U] 3.26 sugar:SC base/AA stacks 98.26
A:300 [ARG] B:9 [U] 2.97 base/AA stacks 98.26
A:303 [GLN] B:7 [U] 2.92 base:SC 98.97
A:339 [LEU] B:6 [U] 3.54 66.55
A:339 [LEU] B:7 [U] 3.69 66.55
A:340 [ASN] B:7 [U] 4.59 94.62
A:342 [ASN] B:6 [U] 2.76 base:SC, base:SC 96.38
A:343 [HIS] B:6 [U] 3.12 base/AA stacks 98.83
A:343 [HIS] B:7 [U] 3.33 base/AA stacks 98.83
A:346 [GLN] B:6 [U] 2.94 base:SC 97.72
A:377 [LYS] B:4 [A] 3.96 80.81
A:378 [HIS] B:6 [U] 3.58 sugar:SC base/AA stacks 91.29
A:380 [CYS] B:4 [A] 3.69 98.69
A:381 [CYS] B:4 [A] 4.18 96.75
A:381 [CYS] B:5 [U] 3.59 96.75
A:381 [CYS] B:6 [U] 3.75 96.75
A:384 [GLN] B:4 [A] 2.94 base:SC 97.72
A:384 [GLN] B:5 [U] 4.87 97.72
A:385 [LYS] B:6 [U] 4.94 91.35
A:413 [GLN] B:3 [U] 3.5 82.87
A:413 [GLN] B:4 [A] 4.73 82.87
A:414 [PHE] B:4 [A] 3.54 75.07
A:416 [ASN] B:3 [U] 2.78 base:SC, base:SC 99.0
A:417 [TYR] B:3 [U] 2.95 base/AA stacks 97.24
A:417 [TYR] B:4 [A] 3.2 base/AA stacks 97.24
A:420 [GLN] B:3 [U] 2.85 base:SC 98.97
A:451 [LYS] B:2 [G] 3.11 sugar:SC 98.91
A:451 [LYS] B:3 [U] 3.44 98.91
A:452 [PHE] B:3 [U] 3.13 84.89
A:454 [SER] B:2 [G] 2.93 base:SC 98.97
A:455 [ASN] B:2 [G] 3.28 98.18
A:455 [ASN] B:3 [U] 3.33 base/AA stacks 98.18
A:458 [GLU] B:2 [G] 2.57 base:SC, base:SC 98.94
A:516 [ASN] B:1 [U] 3.45 63.91
A:516 [ASN] B:2 [G] 4.86 63.91
A:517 [PHE] B:2 [G] 3.44 66.63
A:519 [ASN] B:1 [U] 2.8 base:SC, base:SC 99.0
A:520 [TYR] B:1 [U] 3.0 base/AA stacks 93.54
A:520 [TYR] B:2 [G] 3.33 base/AA stacks 93.54
A:523 [GLN] B:1 [U] 2.88 base:SC 98.32
A:583 [SER] B:1 [U] 3.12 sugar:SC 72.44
A:584 [TYR] B:1 [U] 3.39 base/AA stacks 69.34
A:587 [LYS] B:1 [U] 2.86 base:SC 89.13

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group95 5BZ1_A_B A: Suppressor protein mpt5, Saccharomyces cerevisiae (strain atcc 204508 / s288c) (genetically engineered) B: Synthetic construct (synthetic) P39016 ARM repeat ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3K49_A_B 5BZ1_A_B 0.25 0.65 4.33 0.0 ARM repeat compare
3BSX_A_C 5BZ1_A_B 0.67 0.75 3.22 0.67 ARM repeat compare
5BZ1_A_B 5WZJ_A_B 0.81 0.65 3.05 0.07 ARM repeat compare
3V6Y_A_B 5BZ1_A_B 0.68 0.82 2.14 0.33 ARM repeat compare
3V74_A_B 5BZ1_A_B 0.68 0.82 2.09 0.33 ARM repeat compare