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All interfaces > All interologs > Interface groups > group95 > 5WZJ_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

5WZJ_A
5WZJ_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:135 [TYR] B:10 [G] 4.83 58.16
A:138 [SER] B:10 [G] 3.03 base:SC 94.5
A:139 [HIS] B:10 [G] 3.19 base/AA stacks 86.79
A:142 [GLN] B:10 [G] 2.77 base:SC, base:SC 87.11
A:171 [ARG] B:10 [G] 2.59 69.99
A:172 [SER] B:10 [G] 3.78 88.54
A:174 [SER] B:9 [G] 2.97 base:SC 99.0
A:175 [HIS] B:9 [G] 3.32 base/AA stacks 93.51
A:175 [HIS] B:10 [G] 3.34 base/AA stacks 93.51
A:178 [GLU] B:9 [G] 2.66 base:SC, base:SC 98.08
A:220 [TYR] B:9 [G] 3.59 74.34
A:220 [TYR] B:10 [G] 2.47 74.34
A:223 [HIS] B:8 [C] 3.06 base:SC 98.59
A:223 [HIS] B:9 [G] 3.23 base/AA stacks 98.59
A:224 [VAL] B:9 [G] 4.99 98.25
A:226 [ARG] B:8 [C] 2.91 base:SC, base:SC 97.61
A:243 [TYR] B:8 [C] 3.18 base:BB 81.88
A:244 [GLY] B:7 [A] 3.2 base:BB 33.68
A:244 [GLY] B:8 [C] 3.37 33.68
A:245 [ALA] B:8 [C] 4.01 57.1
A:246 [LYS] B:4 [U] 3.51 sugar:SC 87.19
A:246 [LYS] B:5 [U] 4.8 87.19
A:246 [LYS] B:6 [G] 3.2 87.19
A:247 [SER] B:3 [U] 4.25 59.13
A:248 [SER] B:3 [U] 3.38 79.63
A:251 [LEU] B:3 [U] 3.8 84.89
A:251 [LEU] B:4 [U] 3.67 84.89
A:254 [ARG] B:4 [U] 3.1 89.34
A:300 [GLN] B:7 [A] 2.53 sugar:SC, sugar:SC 68.92
A:300 [GLN] B:8 [C] 2.91 sugar:SC 68.92
A:301 [TYR] B:8 [C] 3.6 37.98
A:301 [TYR] B:9 [G] 4.96 37.98
A:303 [SER] B:7 [A] 4.69 95.45
A:304 [LEU] B:7 [A] 3.39 70.85
A:304 [LEU] B:8 [C] 3.53 70.85
A:307 [GLN] B:7 [A] 3.02 base:SC, base:SC 96.21
A:357 [ASN] B:6 [G] 2.64 sugar:SC 58.27
A:357 [ASN] B:7 [A] 3.35 sugar:SC 58.27
A:358 [SER] B:7 [A] 4.58 83.97
A:360 [SER] B:6 [G] 2.97 base:SC 98.1
A:361 [HIS] B:6 [G] 3.22 base/AA stacks 91.42
A:361 [HIS] B:7 [A] 3.35 base/AA stacks 91.42
A:364 [GLU] B:6 [G] 2.71 base:SC, base:SC 96.01
A:394 [ARG] B:5 [U] 3.89 47.51
A:394 [ARG] B:6 [G] 3.3 47.51
A:395 [CYS] B:6 [G] 3.49 45.82
A:397 [ASN] B:5 [U] 2.86 base:SC, base:SC 92.73
A:398 [PHE] B:4 [U] 3.57 90.3
A:398 [PHE] B:5 [U] 3.34 base/AA stacks 90.3
A:398 [PHE] B:6 [G] 3.3 base/AA stacks 90.3
A:401 [GLN] B:4 [U] 2.72 base:SC, base:SC 96.59
A:401 [GLN] B:5 [U] 3.08 base:SC 96.59
A:431 [GLY] B:5 [U] 3.38 base:BB 85.29
A:432 [LYS] B:5 [U] 3.31 72.38
A:433 [SER] B:5 [U] 3.53 58.0
A:434 [GLY] B:4 [U] 3.71 96.72
A:434 [GLY] B:5 [U] 2.74 base:BB 96.72
A:435 [VAL] B:5 [U] 3.82 98.71
A:497 [LYS] B:2 [A] 3.73 73.74
A:499 [HIS] B:5 [U] 4.21 76.67
A:500 [VAL] B:2 [A] 4.04 76.18
A:500 [VAL] B:3 [U] 3.46 76.18
A:500 [VAL] B:4 [U] 4.07 76.18
A:501 [MET] B:4 [U] 3.32 69.04
A:503 [CYS] B:2 [A] 4.66 89.74
A:504 [LEU] B:2 [A] 3.46 78.59
A:504 [LEU] B:3 [U] 3.84 78.59
A:507 [GLN] B:2 [A] 3.03 base:SC, base:SC 96.74
A:539 [SER] B:1 [G] 4.36 46.68
A:539 [SER] B:2 [A] 3.08 46.68
A:540 [SER] B:2 [A] 2.77 base:SC 43.91
A:542 [ALA] B:1 [G] 3.67 66.27
A:543 [ARG] B:1 [G] 3.28 base/AA stacks 89.33
A:543 [ARG] B:2 [A] 3.11 base:SC base/AA stacks 89.33
A:543 [ARG] B:3 [U] 3.57 89.33
A:546 [GLU] B:1 [G] 2.79 base:SC, base:SC 91.69
A:576 [THR] B:0 [G] 3.0 46.29
A:576 [THR] B:1 [G] 4.08 46.29
A:577 [SER] B:1 [G] 3.03 base:SC 83.05
A:578 [GLY] B:1 [G] 4.92 73.88
A:579 [SER] B:0 [G] 2.63 base:SC 90.13
A:580 [PHE] B:0 [G] 3.37 base/AA stacks 75.03
A:580 [PHE] B:1 [G] 3.37 base/AA stacks 75.03
A:581 [THR] B:1 [G] 4.07 79.35
A:583 [GLU] B:0 [G] 2.91 base:SC, base:SC 84.15
A:584 [LYS] B:1 [G] 3.29 base:SC 83.72
A:612 [LYS] B:0 [G] 4.63 69.31
A:613 [GLN] B:0 [G] 3.35 81.1
A:616 [TYR] B:0 [G] 3.09 base/AA stacks 47.17
A:617 [LEU] B:0 [G] 4.92 74.32

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group95 5WZJ_A_B A: Pumilio homolog 23, Arabidopsis thaliana (genetically engineered) B: Synthetic construct (synthetic) Q9C552 ARM repeat ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3V6Y_A_B 5WZJ_A_B 0.85 0.64 3.34 0.09 ARM repeat compare
5BZ1_A_B 5WZJ_A_B 0.81 0.65 3.05 0.07 ARM repeat compare
3BSX_A_C 5WZJ_A_B 0.66 0.7 2.34 0.11 ARM repeat compare
3K49_A_B 5WZJ_A_B 0.71 0.72 2.65 0.09 ARM repeat compare
3V74_A_B 5WZJ_A_B 0.89 0.64 2.92 0.09 ARM repeat compare