Hi-C analysis tools

Fill in the form below to submit a job with HiCstuff. Fields marked with a star (*) are mandatory.

Please do not submit files larger than 1Gb

I have bam-formatted inputs? Click here

Note: Both file names should have the same basename except for R1/R2 marking them as forward/reverse

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Specify your reference genome (not necessary when matrix input). Choose your reference genome below

or upload a reference genome

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Give your job a name (max 30 characters - please avoid any special characters)

Specify one or multiple enzymes, use the comma as a separator

Specify one or more resolutions, use the comma as a separator (e.g. 5000, 10000, 20000)

If selected, please specify the resolution to use for 3D modelling (if not given, it will use the highest one available)

Would you like to detect and flip inverted contigs?

Upload your centrome position file (optional)

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Specify the number of kb that will be removed around the centromere position given by in the centromere file (optional).

Reset fields (NB: according the the size of your input, submission might take a little while)