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All interfaces > All interologs > Interface groups > group141 > 4N0T_A_B vs 6F4G_B_C

Interface analysis


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Common contacts -

4N0T_A
4N0T_B
6F4G_B
6F4G_C
Conserved?
A:254 [CYS] B:41 [A] B:50 [GLY] C:12 [G] ✔
A:215 [ARG] B:40 [A] B:12 [ASN] C:11 [U] ✔
A:215 [ARG] B:41 [A] B:12 [ASN] C:12 [G] ✔
A:288 [ASP] B:42 [A] B:85 [LYS] C:13 [C] ✔
A:253 [ASN] B:39 [G] B:49 [ARG] C:10 [U] ✔
A:253 [ASN] B:41 [A] B:49 [ARG] C:12 [G] ✔
A:211 [GLU] B:43 [C] B:8 [THR] C:14 [A] ✔
A:241 [ASN] B:43 [C] B:41 [VAL] C:14 [A] ✔
A:241 [ASN] B:44 [A] B:41 [VAL] C:15 [G] ✔
A:255 [CYS] B:41 [A] B:51 [GLN] C:12 [G] ✔
A:255 [CYS] B:42 [A] B:51 [GLN] C:13 [C] ✔
A:251 [PHE] B:41 [A] B:48 [MET] C:12 [G] ✔
A:213 [MET] B:41 [A] B:10 [TYR] C:12 [G] ✔
A:213 [MET] B:42 [A] B:10 [TYR] C:13 [C] ✔
A:216 [ASN] B:40 [A] B:13 [ASN] C:11 [U] ✔
A:257 [PHE] B:42 [A] B:53 [PHE] C:13 [C] ✔
A:257 [PHE] B:43 [C] B:53 [PHE] C:14 [A] ✔
A:243 [PRO] B:43 [C] B:43 [LEU] C:14 [A] ✔
A:246 [GLN] B:41 [A] B:46 [LEU] C:12 [G] ✔
A:290 [LYS] B:43 [C] B:87 [ASP] C:14 [A] ✔
A:290 [LYS] B:44 [A] B:87 [ASP] C:15 [G] ✔
A:287 [ALA] B:42 [A] B:84 [SER] C:13 [C] ✔
A:287 [ALA] B:43 [C] B:84 [SER] C:14 [A] ✔
A:215 [ARG] B:42 [A] B:12 [ASN] C:13 [C] ❌ 6F4G_B_C
A:288 [ASP] B:43 [C] B:85 [LYS] C:14 [A] ❌ 6F4G_B_C
A:253 [ASN] B:40 [A] B:49 [ARG] C:11 [U] ❌ 6F4G_B_C
A:211 [GLU] B:44 [A] B:8 [THR] C:15 [G] ❌ 6F4G_B_C
A:251 [PHE] B:40 [A] B:48 [MET] C:11 [U] ❌ 6F4G_B_C
A:216 [ASN] B:39 [G] B:13 [ASN] C:10 [U] ❌ 6F4G_B_C
A:242 [ILE] B:43 [C] B:42 [ALA] C:14 [A] ❌ 6F4G_B_C
A:243 [PRO] B:41 [A] B:43 [LEU] C:12 [G] ❌ 6F4G_B_C
A:243 [PRO] B:42 [A] B:43 [LEU] C:13 [C] ❌ 6F4G_B_C
A:244 [ALA] B:41 [A] B:44 [LYS] C:12 [G] ❌ 6F4G_B_C
A:290 [LYS] B:42 [A] B:87 [ASP] C:13 [C] ❌ 6F4G_B_C
A:216 [ASN] B:41 [A] B:13 [ASN] C:12 [G] ❌ 4N0T_A_B
A:243 [PRO] B:44 [A] B:43 [LEU] C:15 [G] ❌ 4N0T_A_B
A:246 [GLN] B:39 [G] B:46 [LEU] C:10 [U] ❌ 4N0T_A_B
A:251 [PHE] B:42 [A] B:48 [MET] C:13 [C] ❌ 4N0T_A_B
A:251 [PHE] B:43 [C] B:48 [MET] C:14 [A] ❌ 4N0T_A_B
A:283 [SER] B:40 [A] B:80 [GLN] C:11 [U] ❌ 4N0T_A_B
A:289 [LYS] B:42 [A] B:86 [SER] C:13 [C] ❌ 4N0T_A_B
A:289 [LYS] B:43 [C] B:86 [SER] C:14 [A] ❌ 4N0T_A_B
A:289 [LYS] B:44 [A] B:86 [SER] C:15 [G] ❌ 4N0T_A_B
A:239 [LYS] B:44 [A] B:39 [ASP] C:15 [G] ❌ 6F4G_B:39 no longer at interface
A:217 [LEU] B:41 [A] B:14 [LEU] C:12 [G] ❌ 4N0T_A:217 no longer at interface
A:219 [THR] B:39 [G] B:16 [GLU] C:10 [U] ❌ 4N0T_A:219 no longer at interface
A:219 [THR] B:41 [A] B:16 [GLU] C:12 [G] ❌ 4N0T_A:219 no longer at interface
A:249 [HIS] B:42 [A] B:47 [LYS] C:13 [C] ❌ 4N0T_A:249 no longer at interface
A:249 [HIS] B:43 [C] B:47 [LYS] C:14 [A] ❌ 4N0T_A:249 no longer at interface
A:249 [HIS] B:41 [A] B:47 [LYS] C:12 [G] ❌ 4N0T_A:249 no longer at interface
A:259 [VAL] B:43 [C] B:55 [ILE] C:14 [A] ❌ 4N0T_A:259 no longer at interface
A:280 [ARG] B:40 [A] B:77 [LYS] C:11 [U] ❌ 4N0T_A:280 no longer at interface
A:285 [SER] B:42 [A] B:82 [ALA] C:13 [C] ❌ 4N0T_A:285 no longer at interface
A:286 [LEU] B:42 [A] B:83 [TYR] C:13 [C] ❌ 4N0T_A:286 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.61 3.62 0.00 0.72 0.35 0.56 0.43 0.58 0.55 0.11 0.35


Other pairs involving 4N0T_A_B or 6F4G_B_C

Total number of entries: 24

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 6F4G_B_C 0.80 0.83 0.38 0.43 RNA-binding domain, RBD compare
6F4G_B_C 6F4H_A_B 0.81 0.87 0.36 0.5 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_p_H 0.23 0.65 0.62 0.14 RNA-binding domain, RBD compare
6F4G_B_C 6SQN_A_X 0.91 0.87 0.39 0.6 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_X_G 0.33 0.62 3.54 0.12 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_R_G 0.76 0.68 2.57 0.14 compare
4ED5_A_D 6F4G_B_C 0.57 0.62 2.44 0.1 RNA-binding domain, RBD compare
1G2E_A_B 6F4G_B_C 0.57 0.61 3.03 0.15 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
4PR6_A_B 6F4G_B_C 0.80 0.83 0.4 0.46 RNA-binding domain, RBD compare
3MXH_P_R 6F4G_B_C 0.80 0.77 0.94 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
5TF6_A_B 6F4G_B_C 0.58 0.61 3.75 0.0 RNA-binding domain, RBD compare
1M5O_C_B 6F4G_B_C 0.81 0.81 0.4 0.5 RNA-binding domain, RBD compare
6DCL_A_D 6F4G_B_C 0.32 0.61 2.78 0.26 RNA-binding domain, RBD compare
4N0T_A_B 6SQN_A_X 0.59 0.65 3.87 0.0 RNA-binding domain, RBD compare
4N0T_A_B 6F4G_B_C 0.58 0.61 3.62 0.0 RNA-binding domain, RBD compare
4N0T_A_B 5TF6_A_B 0.98 0.95 0.87 0.96 RNA-binding domain, RBD U6 spliceosomal RNA compare
4N0T_A_B 6F4H_A_B 0.56 0.64 3.75 0.0 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
2NZ4_A_P 6F4G_B_C 0.85 0.8 0.45 0.43 RNA-binding domain, RBD compare
1SJ3_P_R 6F4G_B_C 0.83 0.83 0.4 0.55 RNA-binding domain, RBD compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare