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All interfaces > All interologs > Interface groups > group141 > 4PKD_B_V vs 5DDP_D_A

Interface analysis


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Common contacts -

4PKD_B
4PKD_V
5DDP_D
5DDP_A
Conserved?
B:19 [GLU] V:65 [A] D:18 [GLU] A:35 [A] ✔
B:19 [GLU] V:66 [U] D:18 [GLU] A:36 [U] ✔
B:19 [GLU] V:67 [U] D:18 [GLU] A:37 [U] ✔
B:19 [GLU] V:68 [G] D:18 [GLU] A:38 [G] ✔
B:91 [SER] V:70 [A] D:90 [SER] A:40 [A] ✔
B:91 [SER] V:71 [C] D:90 [SER] A:41 [C] ✔
B:87 [ALA] V:69 [C] D:86 [ALA] A:39 [C] ✔
B:87 [ALA] V:70 [A] D:86 [ALA] A:40 [A] ✔
B:22 [LYS] V:59 [GTP] D:21 [LYS] A:30 [G] ✔
B:22 [LYS] V:60 [G] D:21 [LYS] A:31 [G] ✔
B:53 [GLY] V:68 [G] D:52 [GLY] A:38 [G] ✔
B:56 [PHE] V:69 [C] D:55 [PHE] A:39 [C] ✔
B:56 [PHE] V:70 [A] D:55 [PHE] A:40 [A] ✔
B:15 [ASN] V:67 [U] D:14 [ASN] A:37 [U] ✔
B:15 [ASN] V:68 [G] D:14 [ASN] A:38 [G] ✔
B:17 [LEU] V:68 [G] D:16 [LEU] A:38 [G] ✔
B:11 [THR] V:70 [A] D:10 [THR] A:40 [A] ✔
B:54 [GLN] V:68 [G] D:53 [GLN] A:38 [G] ✔
B:54 [GLN] V:69 [C] D:53 [GLN] A:39 [C] ✔
B:51 [MET] V:68 [G] D:50 [MET] A:38 [G] ✔
B:51 [MET] V:69 [C] D:50 [MET] A:39 [C] ✔
B:51 [MET] V:70 [A] D:50 [MET] A:40 [A] ✔
B:92 [ASP] V:71 [C] D:91 [ASP] A:41 [C] ✔
B:92 [ASP] V:72 [U] D:91 [ASP] A:42 [U] ✔
B:47 [ARG] V:59 [GTP] D:46 [ARG] A:30 [G] ✔
B:47 [ARG] V:74 [C] D:46 [ARG] A:44 [C] ✔
B:47 [ARG] V:75 [G] D:46 [ARG] A:45 [G] ✔
B:50 [LYS] V:68 [G] D:49 [LYS] A:38 [G] ✔
B:50 [LYS] V:70 [A] D:49 [LYS] A:40 [A] ✔
B:88 [LYS] V:69 [C] D:87 [LYS] A:39 [C] ✔
B:49 [LEU] V:65 [A] D:48 [LEU] A:35 [A] ✔
B:49 [LEU] V:66 [U] D:48 [LEU] A:36 [U] ✔
B:49 [LEU] V:68 [G] D:48 [LEU] A:38 [G] ✔
B:49 [LEU] V:75 [G] D:48 [LEU] A:45 [G] ✔
B:48 [SER] V:74 [C] D:47 [SER] A:44 [C] ✔
B:48 [SER] V:75 [G] D:47 [SER] A:45 [G] ✔
B:85 [GLN] V:69 [C] D:84 [GLN] A:39 [C] ✔
B:80 [LYS] V:67 [U] D:79 [LYS] A:37 [U] ✔
B:46 [SER] V:74 [C] D:45 [SER] A:44 [C] ✔
B:44 [LEU] V:70 [A] D:43 [LEU] A:40 [A] ✔
B:44 [LEU] V:71 [C] D:43 [LEU] A:41 [C] ✔
B:89 [THR] V:69 [C] D:88 [THR] A:39 [C] ✔
B:89 [THR] V:70 [A] D:88 [THR] A:40 [A] ✔
B:89 [THR] V:71 [C] D:88 [THR] A:41 [C] ✔
B:13 [TYR] V:68 [G] D:12 [TYR] A:38 [G] ✔
B:13 [TYR] V:69 [C] D:12 [TYR] A:39 [C] ✔
B:90 [ASP] V:70 [A] D:89 [ASP] A:40 [A] ✔
B:90 [ASP] V:71 [C] D:89 [ASP] A:41 [C] ✔
B:23 [LYS] V:59 [GTP] D:22 [LYS] A:30 [G] ✔
B:86 [TYR] V:69 [C] D:85 [TYR] A:39 [C] ✔
B:16 [ASN] V:67 [U] D:15 [ASN] A:37 [U] ✔
B:16 [ASN] V:68 [G] D:15 [ASN] A:38 [G] ✔
B:52 [ARG] V:65 [A] D:51 [ARG] A:35 [A] ✔
B:52 [ARG] V:66 [U] D:51 [ARG] A:36 [U] ✔
B:52 [ARG] V:68 [G] D:51 [ARG] A:38 [G] ✔
B:52 [ARG] V:75 [G] D:51 [ARG] A:45 [G] ✔
B:50 [LYS] V:71 [C] D:49 [LYS] A:41 [C] ❌ 5DDP_D_A
B:47 [ARG] V:60 [G] D:46 [ARG] A:31 [G] ❌ 4PKD_B_V
B:49 [LEU] V:74 [C] D:48 [LEU] A:44 [C] ❌ 4PKD_B_V
B:50 [LYS] V:75 [G] D:49 [LYS] A:45 [G] ❌ 4PKD_B_V
B:50 [LYS] V:69 [C] D:49 [LYS] A:39 [C] ❌ 4PKD_B_V
B:46 [SER] V:73 [C] D:45 [SER] A:43 [C] ❌ 5DDP_A:43 no longer at interface
B:24 [ASP] V:59 [GTP] D:23 [ASP] A:30 [G] ❌ 5DDP_D:23 no longer at interface
B:20 [LYS] V:60 [G] D:19 [LYS] A:31 [G] ❌ 4PKD_B:20 no longer at interface
B:93 [ILE] V:71 [C] D:92 [ILE] A:41 [C] ❌ 4PKD_B:93 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.71 0.29 0.85 0.96 0.33 0.9 0.92 0.98 0.99 0.77 0.44


Other pairs involving 4PKD_B_V or 5DDP_D_A

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
4PR6_A_B 5DDP_D_A 0.93 0.72 0.39 0.69 RNA-binding domain, RBD compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare