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All interfaces > All interologs > Interface groups > group141 > 5DDP_D_A vs 7DCO_R_G

Interface analysis


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Common contacts -

5DDP_D
5DDP_A
7DCO_R
7DCO_G
Conserved?
D:10 [THR] A:40 [A] R:136 [THR] G:114 [U] ✔
D:89 [ASP] A:40 [A] R:229 [ASP] G:114 [U] ✔
D:84 [GLN] A:39 [C] R:224 [LYS] G:113 [U] ✔
D:15 [ASN] A:37 [U] R:141 [GLY] G:111 [U] ✔
D:15 [ASN] A:38 [G] R:141 [GLY] G:112 [U] ✔
D:51 [ARG] A:38 [G] R:180 [ASN] G:112 [U] ✔
D:53 [GLN] A:38 [G] R:181 [CYS] G:112 [U] ✔
D:53 [GLN] A:39 [C] R:181 [CYS] G:113 [U] ✔
D:87 [LYS] A:39 [C] R:227 [ASN] G:113 [U] ✔
D:86 [ALA] A:39 [C] R:226 [ALA] G:113 [U] ✔
D:86 [ALA] A:40 [A] R:226 [ALA] G:114 [U] ✔
D:85 [TYR] A:39 [C] R:225 [TRP] G:113 [U] ✔
D:12 [TYR] A:38 [G] R:138 [TYR] G:112 [U] ✔
D:12 [TYR] A:39 [C] R:138 [TYR] G:113 [U] ✔
D:4 [GLU] A:39 [C] R:124 [MET] G:113 [U] ✔
D:90 [SER] A:40 [A] R:230 [PRO] G:114 [U] ✔
D:88 [THR] A:40 [A] R:228 [GLU] G:114 [U] ✔
D:14 [ASN] A:38 [G] R:140 [GLY] G:112 [U] ✔
D:50 [MET] A:38 [G] R:179 [LYS] G:112 [U] ✔
D:50 [MET] A:39 [C] R:179 [LYS] G:113 [U] ✔
D:55 [PHE] A:39 [C] R:183 [PHE] G:113 [U] ✔
D:55 [PHE] A:40 [A] R:183 [PHE] G:114 [U] ✔
D:43 [LEU] A:40 [A] R:174 [ARG] G:114 [U] ✔
D:88 [THR] A:39 [C] R:228 [GLU] G:113 [U] ❌ 7DCO_R_G
D:14 [ASN] A:37 [U] R:140 [GLY] G:111 [U] ❌ 7DCO_R_G
D:50 [MET] A:40 [A] R:179 [LYS] G:114 [U] ❌ 7DCO_R_G
D:43 [LEU] A:42 [U] R:174 [ARG] G:115 [U] ❌ 5DDP_D_A
D:45 [SER] A:42 [U] R:176 [VAL] G:115 [U] ❌ 5DDP_D_A
D:45 [SER] A:40 [A] R:176 [VAL] G:114 [U] ❌ 5DDP_D_A
D:47 [SER] A:38 [G] R:178 [SER] G:112 [U] ❌ 5DDP_D_A
D:84 [GLN] A:38 [G] R:224 [LYS] G:112 [U] ❌ 5DDP_D_A
D:87 [LYS] A:40 [A] R:227 [ASN] G:114 [U] ❌ 5DDP_D_A
D:90 [SER] A:42 [U] R:230 [PRO] G:115 [U] ❌ 5DDP_D_A
D:18 [GLU] A:36 [U] R:148 [SER] G:110 [U] ❌ 7DCO_R:148, 7DCO_G:110 no longer at interface
D:51 [ARG] A:36 [U] R:180 [ASN] G:110 [U] ❌ 7DCO_G:110 no longer at interface
D:18 [GLU] A:37 [U] R:148 [SER] G:111 [U] ❌ 7DCO_R:148 no longer at interface
D:18 [GLU] A:38 [G] R:148 [SER] G:112 [U] ❌ 7DCO_R:148 no longer at interface
D:79 [LYS] A:37 [U] R:218 [GLY] G:111 [U] ❌ 7DCO_R:218 no longer at interface
D:91 [ASP] A:42 [U] R:234 [ALA] G:115 [U] ❌ 7DCO_R:234 no longer at interface
D:16 [LEU] A:38 [G] R:142 [ILE] G:112 [U] ❌ 7DCO_R:142 no longer at interface
D:3 [PRO] A:39 [C] R:123 [ASP] G:113 [U] ❌ 5DDP_D:3 no longer at interface
D:17 [ASN] A:37 [U] R:143 [ASP] G:111 [U] ❌ 5DDP_D:17 no longer at interface
D:82 [ARG] A:37 [U] R:222 [LEU] G:111 [U] ❌ 5DDP_D:82 no longer at interface
D:82 [ARG] A:38 [G] R:222 [LEU] G:112 [U] ❌ 5DDP_D:82 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
0.54 2.57 0.21 0.8 0.12 0.66 0.83 0.74 0.72 0.29 0.52


Other pairs involving 5DDP_D_A or 7DCO_R_G

Total number of entries: 20

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 7DCO_R_G 0.76 0.51 2.54 0.17 compare
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_R_G 0.76 0.68 2.57 0.14 compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
4PR6_A_B 5DDP_D_A 0.93 0.72 0.39 0.69 RNA-binding domain, RBD compare
4PR6_A_B 7DCO_R_G 0.75 0.51 2.49 0.17 compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_R_G 0.79 0.68 2.58 0.17 compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
6SQN_A_X 7DCO_R_G 0.73 0.72 2.65 0.17 compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
1SJ3_P_R 7DCO_R_G 0.76 0.5 2.55 0.17 compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_R_G 0.77 0.7 2.58 0.17 compare