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All interfaces > All interologs > Interface groups > group141 > 1A9N_B_Q vs 1M5O_C_B

Interface analysis


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Common contacts -

1A9N_B
1A9N_Q
1M5O_C
1M5O_B
Conserved?
B:13 [TYR] Q:9 [G] C:13 [TYR] B:39 [G] ✔
B:13 [TYR] Q:10 [C] C:13 [TYR] B:40 [C] ✔
B:91 [SER] Q:11 [A] C:91 [SER] B:41 [A] ✔
B:91 [SER] Q:12 [G] C:91 [SER] B:42 [C] ✔
B:90 [ASP] Q:11 [A] C:90 [ASP] B:41 [A] ✔
B:90 [ASP] Q:12 [G] C:90 [ASP] B:42 [C] ✔
B:15 [ASN] Q:8 [U] C:15 [ASN] B:38 [U] ✔
B:15 [ASN] Q:9 [G] C:15 [ASN] B:39 [G] ✔
B:87 [ALA] Q:10 [C] C:87 [ALA] B:40 [C] ✔
B:87 [ALA] Q:11 [A] C:87 [ALA] B:41 [A] ✔
B:11 [THR] Q:11 [A] C:11 [THR] B:41 [A] ✔
B:6 [ILE] Q:10 [C] C:6 [THR] B:40 [C] ✔
B:88 [LYS] Q:10 [C] C:88 [LYS] B:40 [C] ✔
B:22 [LYS] Q:0 [C] C:22 [LYS] B:31 [A] ✔
B:53 [GLY] Q:9 [G] C:53 [GLY] B:39 [G] ✔
B:44 [VAL] Q:11 [A] C:44 [LEU] B:41 [A] ✔
B:44 [VAL] Q:12 [G] C:44 [LEU] B:42 [C] ✔
B:17 [MET] Q:9 [G] C:17 [LEU] B:39 [G] ✔
B:54 [GLN] Q:9 [G] C:54 [GLN] B:39 [G] ✔
B:54 [GLN] Q:10 [C] C:54 [GLN] B:40 [C] ✔
B:46 [LEU] Q:13 [U] C:46 [SER] B:44 [C] ✔
B:51 [MET] Q:9 [G] C:51 [MET] B:39 [G] ✔
B:51 [MET] Q:10 [C] C:51 [MET] B:40 [C] ✔
B:51 [MET] Q:11 [A] C:51 [MET] B:41 [A] ✔
B:19 [ASP] Q:6 [A] C:19 [GLU] B:36 [A] ✔
B:19 [ASP] Q:7 [U] C:19 [GLU] B:37 [U] ✔
B:19 [ASP] Q:9 [G] C:19 [GLU] B:39 [G] ✔
B:86 [TYR] Q:10 [C] C:86 [TYR] B:40 [C] ✔
B:85 [GLN] Q:10 [C] C:85 [GLN] B:40 [C] ✔
B:80 [LYS] Q:8 [U] C:80 [LYS] B:38 [U] ✔
B:20 [LYS] Q:4 [G] C:20 [LYS] B:34 [C] ✔
B:16 [ASN] Q:8 [U] C:16 [ASN] B:38 [U] ✔
B:16 [ASN] Q:9 [G] C:16 [ASN] B:39 [G] ✔
B:49 [MET] Q:6 [A] C:49 [LEU] B:36 [A] ✔
B:49 [MET] Q:7 [U] C:49 [LEU] B:37 [U] ✔
B:49 [MET] Q:9 [G] C:49 [LEU] B:39 [G] ✔
B:56 [PHE] Q:10 [C] C:56 [PHE] B:40 [C] ✔
B:56 [PHE] Q:11 [A] C:56 [PHE] B:41 [A] ✔
B:92 [ASP] Q:12 [G] C:92 [ASP] B:42 [C] ✔
B:52 [ARG] Q:6 [A] C:52 [ARG] B:36 [A] ✔
B:52 [ARG] Q:7 [U] C:52 [ARG] B:37 [U] ✔
B:52 [ARG] Q:9 [G] C:52 [ARG] B:39 [G] ✔
B:89 [THR] Q:10 [C] C:89 [THR] B:40 [C] ✔
B:89 [THR] Q:11 [A] C:89 [THR] B:41 [A] ✔
B:89 [THR] Q:12 [G] C:89 [THR] B:42 [C] ✔
B:93 [ILE] Q:12 [G] C:93 [ILE] B:42 [C] ✔
B:50 [LYS] Q:9 [G] C:50 [LYS] B:39 [G] ✔
B:44 [VAL] Q:13 [U] C:44 [LEU] B:44 [C] ❌ 1M5O_C_B
B:46 [LEU] Q:11 [A] C:46 [SER] B:41 [A] ❌ 1M5O_C_B
B:46 [LEU] Q:12 [G] C:46 [SER] B:42 [C] ❌ 1M5O_C_B
B:80 [LYS] Q:7 [U] C:80 [LYS] B:37 [U] ❌ 1M5O_C_B
B:20 [LYS] Q:6 [A] C:20 [LYS] B:36 [A] ❌ 1M5O_C_B
B:92 [ASP] Q:11 [A] C:92 [ASP] B:41 [A] ❌ 1M5O_C_B
B:50 [LYS] Q:11 [A] C:50 [LYS] B:41 [A] ❌ 1M5O_C_B
B:19 [ASP] Q:8 [U] C:19 [GLU] B:38 [U] ❌ 1A9N_B_Q
B:20 [LYS] Q:5 [U] C:20 [LYS] B:35 [C] ❌ 1M5O_B:35 no longer at interface
B:20 [LYS] Q:18 [C] C:20 [LYS] B:48 [G] ❌ 1M5O_B:48 no longer at interface
B:23 [LYS] Q:13 [U] C:23 [LYS] B:44 [C] ❌ 1M5O_C:23 no longer at interface
B:27 [LYS] Q:13 [U] C:27 [LYS] B:44 [C] ❌ 1M5O_C:27 no longer at interface
B:43 [ILE] Q:13 [U] C:43 [ILE] B:44 [C] ❌ 1M5O_C:43 no longer at interface
B:58 [ILE] Q:11 [A] C:58 [ILE] B:41 [A] ❌ 1M5O_C:58 no longer at interface
B:83 [ARG] Q:8 [U] C:83 [ARG] B:38 [U] ❌ 1M5O_C:83 no longer at interface
B:45 [ALA] Q:13 [U] C:45 [VAL] B:44 [C] ❌ 1M5O_C:45 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.83 0.56 0.43 0.97 0.33 1.0 0.71 0.86 0.77 0.44 0.50


Other pairs involving 1A9N_B_Q or 1M5O_C_B

Total number of entries: 31

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 1DRZ_A_B 0.81 0.85 0.47 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 1G2E_A_B 0.54 0.62 3.02 0.16 RNA-binding domain, RBD compare
1DRZ_A_B 1M5O_C_B 0.96 0.68 0.4 0.86 RNA-binding domain, RBD compare
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 1SJ3_P_R 0.83 0.85 0.49 0.55 RNA-binding domain, RBD compare
1M5O_C_B 1SJ3_P_R 0.96 0.69 0.42 0.91 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1A9N_B_Q 2NZ4_A_P 0.79 0.83 0.54 0.5 RNA-binding domain, RBD compare
1M5O_C_B 2NZ4_A_P 0.97 0.63 0.49 0.86 RNA-binding domain, RBD compare
1A9N_B_Q 3MXH_P_R 0.79 0.78 1.0 0.46 RNA-binding domain, RBD compare
1M5O_C_B 3MXH_P_R 0.94 0.68 1.06 0.81 RNA-binding domain, RBD compare
1A9N_B_Q 4ED5_A_D 0.54 0.62 2.45 0.1 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1A9N_B_Q 4PR6_A_B 0.81 0.85 0.49 0.54 RNA-binding domain, RBD compare
1M5O_C_B 4PR6_A_B 0.97 0.69 0.39 0.85 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
1A9N_B_Q 5WWE_A_B 0.72 0.6 2.34 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 6DCL_A_D 0.32 0.6 2.71 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
1M5O_C_B 6F4G_B_C 0.81 0.81 0.4 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 6F4H_A_B 0.81 0.85 0.49 0.5 RNA-binding domain, RBD compare
1M5O_C_B 6F4H_A_B 0.95 0.95 0.48 0.7 RNA-binding domain, RBD compare
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_4_G 0.43 0.58 1.31 0.17 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_R_G 0.79 0.68 2.58 0.17 compare
1A9N_B_Q 7DCO_X_G 0.31 0.63 3.58 0.12 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_p_H 0.32 0.68 0.46 0.29 RNA-binding domain, RBD compare