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All interfaces > All interologs > Interface groups > group141 > 2NZ4_A_P

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2NZ4_A
2NZ4_P
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:11 [THR] P:17G [A] 4.39 0.0
A:13 [TYR] P:17E [G] 3.2 0.0
A:13 [TYR] P:17F [C] 3.37 0.0
A:15 [ASN] P:17D [U] 3.91 0.0
A:15 [ASN] P:17E [G] 3.36 0.0
A:16 [ASN] P:17D [U] 2.92 0.0
A:16 [ASN] P:17E [G] 2.98 0.0
A:17 [LEU] P:17E [G] 4.45 0.0
A:19 [GLU] P:17B [A] 4.25 0.0
A:19 [GLU] P:17C [U] 2.98 0.0
A:19 [GLU] P:17D [U] 4.44 0.0
A:19 [GLU] P:17E [G] 2.64 0.0
A:20 [LYS] P:14 [C] 4.39 P:20 [G] 0.0
A:20 [LYS] P:15 [A] 4.23 P:19 [U] 0.0
A:20 [LYS] P:16 [C] 2.93 P:18 [G] 0.0
A:22 [LYS] P:13 [G] 2.97 P:21 [C] 0.0
A:22 [LYS] P:14 [C] 2.58 P:20 [G] 0.0
A:24 [ASP] P:110 [U] 4.87 0.0
A:44 [LEU] P:17G [A] 3.96 0.0
A:44 [LEU] P:17H [C] 4.63 0.0
A:46 [SER] P:17J [C] 4.89 0.0
A:46 [SER] P:17K [C] 3.14 0.0
A:47 [ARG] P:13 [G] 4.47 P:21 [C] 0.0
A:47 [ARG] P:14 [C] 4.14 P:20 [G] 0.0
A:47 [ARG] P:17K [C] 4.94 0.0
A:47 [ARG] P:17L [G] 4.96 0.0
A:48 [SER] P:17K [C] 3.67 0.0
A:48 [SER] P:17L [G] 3.67 0.0
A:49 [LEU] P:17B [A] 3.82 0.0
A:49 [LEU] P:17C [U] 4.32 0.0
A:49 [LEU] P:17E [G] 4.92 0.0
A:49 [LEU] P:17L [G] 2.77 0.0
A:50 [LYS] P:17E [G] 2.8 0.0
A:50 [LYS] P:17L [G] 4.52 0.0
A:51 [MET] P:17E [G] 4.47 0.0
A:51 [MET] P:17F [C] 4.08 0.0
A:51 [MET] P:17G [A] 3.24 0.0
A:52 [ARG] P:17B [A] 2.92 0.0
A:52 [ARG] P:17C [U] 3.35 0.0
A:52 [ARG] P:17E [G] 3.22 0.0
A:52 [ARG] P:17L [G] 3.11 0.0
A:53 [GLY] P:17E [G] 3.43 0.0
A:54 [GLN] P:17E [G] 2.96 0.0
A:54 [GLN] P:17F [C] 3.87 0.0
A:56 [PHE] P:17F [C] 3.87 0.0
A:56 [PHE] P:17G [A] 3.16 0.0
A:80 [LYS] P:17D [U] 2.57 0.0
A:85 [GLN] P:17F [C] 2.88 0.0
A:86 [TYR] P:17F [C] 3.35 0.0
A:87 [ALA] P:17F [C] 3.54 0.0
A:87 [ALA] P:17G [A] 4.29 0.0
A:88 [LYS] P:17F [C] 3.06 0.0
A:89 [THR] P:17F [C] 4.46 0.0
A:89 [THR] P:17G [A] 2.88 0.0
A:89 [THR] P:17H [C] 2.81 0.0
A:90 [ASP] P:17G [A] 3.59 0.0
A:90 [ASP] P:17H [C] 3.07 0.0
A:91 [SER] P:17G [A] 2.89 0.0
A:91 [SER] P:17H [C] 3.26 0.0
A:92 [ASP] P:17H [C] 2.67 0.0
A:92 [ASP] P:17I [U] 4.83 0.0
A:93 [ILE] P:17H [C] 4.31 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 2NZ4_A_P A: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) P: Glms ribozyme P09012 RNA-binding domain, RBD glmS glucosamine-6-phosphate activated ribozyme ✘

Interologs

Total number of interologs for this interface: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 2NZ4_A_P 0.97 0.65 0.35 0.93 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
1A9N_B_Q 2NZ4_A_P 0.79 0.83 0.54 0.5 RNA-binding domain, RBD compare
1M5O_C_B 2NZ4_A_P 0.97 0.63 0.49 0.86 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
2NZ4_A_P 3MXH_P_R 0.94 0.6 0.92 0.81 RNA-binding domain, RBD compare
2NZ4_A_P 6F4G_B_C 0.85 0.8 0.45 0.43 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 4PR6_A_B 0.96 0.66 0.34 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 6F4H_A_B 0.92 0.95 0.41 0.7 RNA-binding domain, RBD compare
2NZ4_A_P 6SQN_A_X 0.96 0.93 0.39 0.8 RNA-binding domain, RBD compare
1SJ3_P_R 2NZ4_A_P 0.94 0.65 0.37 0.91 RNA-binding domain, RBD compare