Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
1A9N_B
|
1A9N_Q
|
3MXH_P
|
3MXH_R
|
Conserved?
|
---|---|---|---|---|
B:13 [TYR] | Q:9 [G] | P:13 [TYR] | R:663 [G] | ✔ |
B:13 [TYR] | Q:10 [C] | P:13 [TYR] | R:664 [C] | ✔ |
B:91 [SER] | Q:11 [A] | P:90 [ASP] | R:665 [A] | ✔ |
B:91 [SER] | Q:12 [G] | P:90 [ASP] | R:666 [C] | ✔ |
B:90 [ASP] | Q:11 [A] | P:89 [THR] | R:665 [A] | ✔ |
B:90 [ASP] | Q:12 [G] | P:89 [THR] | R:666 [C] | ✔ |
B:15 [ASN] | Q:8 [U] | P:15 [ASN] | R:662 [U] | ✔ |
B:15 [ASN] | Q:9 [G] | P:15 [ASN] | R:663 [G] | ✔ |
B:87 [ALA] | Q:10 [C] | P:87 [ALA] | R:664 [C] | ✔ |
B:87 [ALA] | Q:11 [A] | P:87 [ALA] | R:665 [A] | ✔ |
B:11 [THR] | Q:11 [A] | P:11 [THR] | R:665 [A] | ✔ |
B:53 [GLY] | Q:9 [G] | P:53 [GLY] | R:663 [G] | ✔ |
B:44 [VAL] | Q:11 [A] | P:44 [LEU] | R:665 [A] | ✔ |
B:44 [VAL] | Q:12 [G] | P:44 [LEU] | R:666 [C] | ✔ |
B:17 [MET] | Q:9 [G] | P:17 [LEU] | R:663 [G] | ✔ |
B:54 [GLN] | Q:9 [G] | P:54 [GLN] | R:663 [G] | ✔ |
B:54 [GLN] | Q:10 [C] | P:54 [GLN] | R:664 [C] | ✔ |
B:51 [MET] | Q:9 [G] | P:51 [MET] | R:663 [G] | ✔ |
B:51 [MET] | Q:10 [C] | P:51 [MET] | R:664 [C] | ✔ |
B:51 [MET] | Q:11 [A] | P:51 [MET] | R:665 [A] | ✔ |
B:19 [ASP] | Q:6 [A] | P:19 [GLU] | R:660 [A] | ✔ |
B:19 [ASP] | Q:7 [U] | P:19 [GLU] | R:661 [U] | ✔ |
B:19 [ASP] | Q:9 [G] | P:19 [GLU] | R:663 [G] | ✔ |
B:86 [TYR] | Q:10 [C] | P:86 [TYR] | R:664 [C] | ✔ |
B:85 [GLN] | Q:10 [C] | P:85 [GLN] | R:664 [C] | ✔ |
B:80 [LYS] | Q:8 [U] | P:80 [LYS] | R:662 [U] | ✔ |
B:20 [LYS] | Q:4 [G] | P:20 [LYS] | R:64 [C] | ✔ |
B:16 [ASN] | Q:8 [U] | P:16 [ASN] | R:662 [U] | ✔ |
B:16 [ASN] | Q:9 [G] | P:16 [ASN] | R:663 [G] | ✔ |
B:49 [MET] | Q:6 [A] | P:49 [LEU] | R:660 [A] | ✔ |
B:49 [MET] | Q:7 [U] | P:49 [LEU] | R:661 [U] | ✔ |
B:49 [MET] | Q:9 [G] | P:49 [LEU] | R:663 [G] | ✔ |
B:56 [PHE] | Q:10 [C] | P:56 [PHE] | R:664 [C] | ✔ |
B:56 [PHE] | Q:11 [A] | P:56 [PHE] | R:665 [A] | ✔ |
B:92 [ASP] | Q:12 [G] | P:91 [SER] | R:666 [C] | ✔ |
B:52 [ARG] | Q:6 [A] | P:52 [ARG] | R:660 [A] | ✔ |
B:52 [ARG] | Q:7 [U] | P:52 [ARG] | R:661 [U] | ✔ |
B:52 [ARG] | Q:9 [G] | P:52 [ARG] | R:663 [G] | ✔ |
B:89 [THR] | Q:10 [C] | P:88 [LYS] | R:664 [C] | ✔ |
B:89 [THR] | Q:11 [A] | P:88 [LYS] | R:665 [A] | ✔ |
B:93 [ILE] | Q:12 [G] | P:92 [ASP] | R:666 [C] | ✔ |
B:50 [LYS] | Q:9 [G] | P:50 [LYS] | R:663 [G] | ✔ |
B:50 [LYS] | Q:11 [A] | P:50 [LYS] | R:665 [A] | ✔ |
B:80 [LYS] | Q:7 [U] | P:80 [LYS] | R:661 [U] | ❌ 3MXH_P_R |
B:20 [LYS] | Q:6 [A] | P:20 [LYS] | R:660 [A] | ❌ 3MXH_P_R |
B:92 [ASP] | Q:11 [A] | P:91 [SER] | R:665 [A] | ❌ 3MXH_P_R |
B:89 [THR] | Q:12 [G] | P:88 [LYS] | R:666 [C] | ❌ 3MXH_P_R |
B:19 [ASP] | Q:8 [U] | P:19 [GLU] | R:662 [U] | ❌ 1A9N_B_Q |
B:50 [LYS] | Q:10 [C] | P:50 [LYS] | R:664 [C] | ❌ 1A9N_B_Q |
B:23 [LYS] | Q:13 [U] | P:23 [LYS] | R:667 [U] | ❌ 3MXH_P:23, 3MXH_R:667 no longer at interface |
B:27 [LYS] | Q:13 [U] | P:27 [LYS] | R:667 [U] | ❌ 3MXH_P:27, 3MXH_R:667 no longer at interface |
B:43 [ILE] | Q:13 [U] | P:43 [ILE] | R:667 [U] | ❌ 3MXH_P:43, 3MXH_R:667 no longer at interface |
B:22 [LYS] | Q:0 [C] | P:22 [LYS] | R:33 [A] | ❌ 3MXH_R:33 no longer at interface |
B:44 [VAL] | Q:13 [U] | P:44 [LEU] | R:667 [U] | ❌ 3MXH_R:667 no longer at interface |
B:46 [LEU] | Q:13 [U] | P:46 [SER] | R:667 [U] | ❌ 3MXH_P:46, 3MXH_R:667 no longer at interface |
B:45 [ALA] | Q:13 [U] | P:45 [VAL] | R:667 [U] | ❌ 3MXH_P:45, 3MXH_R:667 no longer at interface |
B:20 [LYS] | Q:5 [U] | P:20 [LYS] | R:65 [C] | ❌ 3MXH_R:65 no longer at interface |
B:20 [LYS] | Q:18 [C] | P:20 [LYS] | R:77 [U] | ❌ 3MXH_R:77 no longer at interface |
B:58 [ILE] | Q:11 [A] | P:58 [ILE] | R:665 [A] | ❌ 3MXH_P:58 no longer at interface |
B:83 [ARG] | Q:8 [U] | P:83 [ARG] | R:662 [U] | ❌ 3MXH_P:83 no longer at interface |
B:46 [LEU] | Q:11 [A] | P:46 [SER] | R:665 [A] | ❌ 3MXH_P:46 no longer at interface |
B:46 [LEU] | Q:12 [G] | P:46 [SER] | R:666 [C] | ❌ 3MXH_P:46 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
RNA-binding domain, RBD | 0.78 | 1.0 | 0.46 | 0.96 | 0.23 | 1.0 | 0.62 | 0.79 | 0.67 | 0.42 | 0.68 |
Other pairs involving 1A9N_B_Q or 3MXH_P_R
Total number of entries: 31