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All interfaces > All interologs > Interface groups > group141 > 1A9N_B_Q vs 5DDP_D_A

Interface analysis


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Common contacts -

1A9N_B
1A9N_Q
5DDP_D
5DDP_A
Conserved?
B:13 [TYR] Q:9 [G] D:12 [TYR] A:38 [G] ✔
B:13 [TYR] Q:10 [C] D:12 [TYR] A:39 [C] ✔
B:91 [SER] Q:11 [A] D:90 [SER] A:40 [A] ✔
B:91 [SER] Q:12 [G] D:90 [SER] A:41 [C] ✔
B:90 [ASP] Q:11 [A] D:89 [ASP] A:40 [A] ✔
B:90 [ASP] Q:12 [G] D:89 [ASP] A:41 [C] ✔
B:15 [ASN] Q:8 [U] D:14 [ASN] A:37 [U] ✔
B:15 [ASN] Q:9 [G] D:14 [ASN] A:38 [G] ✔
B:87 [ALA] Q:10 [C] D:86 [ALA] A:39 [C] ✔
B:87 [ALA] Q:11 [A] D:86 [ALA] A:40 [A] ✔
B:11 [THR] Q:11 [A] D:10 [THR] A:40 [A] ✔
B:88 [LYS] Q:10 [C] D:87 [LYS] A:39 [C] ✔
B:22 [LYS] Q:0 [C] D:21 [LYS] A:30 [G] ✔
B:22 [LYS] Q:1 [C] D:21 [LYS] A:31 [G] ✔
B:53 [GLY] Q:9 [G] D:52 [GLY] A:38 [G] ✔
B:44 [VAL] Q:11 [A] D:43 [LEU] A:40 [A] ✔
B:44 [VAL] Q:12 [G] D:43 [LEU] A:41 [C] ✔
B:17 [MET] Q:9 [G] D:16 [LEU] A:38 [G] ✔
B:54 [GLN] Q:9 [G] D:53 [GLN] A:38 [G] ✔
B:54 [GLN] Q:10 [C] D:53 [GLN] A:39 [C] ✔
B:51 [MET] Q:9 [G] D:50 [MET] A:38 [G] ✔
B:51 [MET] Q:10 [C] D:50 [MET] A:39 [C] ✔
B:51 [MET] Q:11 [A] D:50 [MET] A:40 [A] ✔
B:19 [ASP] Q:6 [A] D:18 [GLU] A:35 [A] ✔
B:19 [ASP] Q:7 [U] D:18 [GLU] A:36 [U] ✔
B:19 [ASP] Q:9 [G] D:18 [GLU] A:38 [G] ✔
B:86 [TYR] Q:10 [C] D:85 [TYR] A:39 [C] ✔
B:85 [GLN] Q:10 [C] D:84 [GLN] A:39 [C] ✔
B:80 [LYS] Q:8 [U] D:79 [LYS] A:37 [U] ✔
B:16 [ASN] Q:8 [U] D:15 [ASN] A:37 [U] ✔
B:16 [ASN] Q:9 [G] D:15 [ASN] A:38 [G] ✔
B:49 [MET] Q:6 [A] D:48 [LEU] A:35 [A] ✔
B:49 [MET] Q:7 [U] D:48 [LEU] A:36 [U] ✔
B:49 [MET] Q:9 [G] D:48 [LEU] A:38 [G] ✔
B:56 [PHE] Q:10 [C] D:55 [PHE] A:39 [C] ✔
B:56 [PHE] Q:11 [A] D:55 [PHE] A:40 [A] ✔
B:92 [ASP] Q:12 [G] D:91 [ASP] A:41 [C] ✔
B:52 [ARG] Q:6 [A] D:51 [ARG] A:35 [A] ✔
B:52 [ARG] Q:7 [U] D:51 [ARG] A:36 [U] ✔
B:52 [ARG] Q:9 [G] D:51 [ARG] A:38 [G] ✔
B:89 [THR] Q:10 [C] D:88 [THR] A:39 [C] ✔
B:89 [THR] Q:11 [A] D:88 [THR] A:40 [A] ✔
B:89 [THR] Q:12 [G] D:88 [THR] A:41 [C] ✔
B:93 [ILE] Q:12 [G] D:92 [ILE] A:41 [C] ✔
B:50 [LYS] Q:9 [G] D:49 [LYS] A:38 [G] ✔
B:50 [LYS] Q:11 [A] D:49 [LYS] A:40 [A] ✔
B:46 [LEU] Q:11 [A] D:45 [SER] A:40 [A] ❌ 5DDP_D_A
B:46 [LEU] Q:12 [G] D:45 [SER] A:41 [C] ❌ 5DDP_D_A
B:80 [LYS] Q:7 [U] D:79 [LYS] A:36 [U] ❌ 5DDP_D_A
B:20 [LYS] Q:6 [A] D:19 [LYS] A:35 [A] ❌ 5DDP_D_A
B:92 [ASP] Q:11 [A] D:91 [ASP] A:40 [A] ❌ 5DDP_D_A
B:19 [ASP] Q:8 [U] D:18 [GLU] A:37 [U] ❌ 1A9N_B_Q
B:20 [LYS] Q:1 [C] D:19 [LYS] A:31 [G] ❌ 1A9N_B_Q
B:23 [LYS] Q:0 [C] D:22 [LYS] A:30 [G] ❌ 1A9N_B_Q
B:47 [LYS] Q:0 [C] D:46 [ARG] A:30 [G] ❌ 1A9N_B_Q
B:47 [LYS] Q:1 [C] D:46 [ARG] A:31 [G] ❌ 1A9N_B_Q
B:50 [LYS] Q:10 [C] D:49 [LYS] A:39 [C] ❌ 1A9N_B_Q
B:23 [LYS] Q:13 [U] D:22 [LYS] A:43 [C] ❌ 5DDP_A:43 no longer at interface
B:27 [LYS] Q:13 [U] D:26 [LYS] A:43 [C] ❌ 5DDP_D:26, 5DDP_A:43 no longer at interface
B:43 [ILE] Q:13 [U] D:42 [ILE] A:43 [C] ❌ 5DDP_D:42, 5DDP_A:43 no longer at interface
B:44 [VAL] Q:13 [U] D:43 [LEU] A:43 [C] ❌ 5DDP_A:43 no longer at interface
B:46 [LEU] Q:13 [U] D:45 [SER] A:43 [C] ❌ 5DDP_A:43 no longer at interface
B:45 [ALA] Q:13 [U] D:44 [VAL] A:43 [C] ❌ 5DDP_D:44, 5DDP_A:43 no longer at interface
B:20 [LYS] Q:5 [U] D:19 [LYS] A:34 [C] ❌ 5DDP_A:34 no longer at interface
B:20 [LYS] Q:18 [C] D:19 [LYS] A:47 [G] ❌ 5DDP_A:47 no longer at interface
B:6 [ILE] Q:10 [C] D:5 [THR] A:39 [C] ❌ 5DDP_D:5 no longer at interface
B:58 [ILE] Q:11 [A] D:57 [ILE] A:40 [A] ❌ 5DDP_D:57 no longer at interface
B:83 [ARG] Q:8 [U] D:82 [ARG] A:37 [U] ❌ 5DDP_D:82 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.82 0.42 0.46 0.94 0.37 0.97 0.69 0.81 0.79 0.58 0.50


Other pairs involving 1A9N_B_Q or 5DDP_D_A

Total number of entries: 31

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 1DRZ_A_B 0.81 0.85 0.47 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 1G2E_A_B 0.54 0.62 3.02 0.16 RNA-binding domain, RBD compare
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 1SJ3_P_R 0.83 0.85 0.49 0.55 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1A9N_B_Q 2NZ4_A_P 0.79 0.83 0.54 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 3MXH_P_R 0.79 0.78 1.0 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 4ED5_A_D 0.54 0.62 2.45 0.1 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 4PR6_A_B 0.81 0.85 0.49 0.54 RNA-binding domain, RBD compare
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
4PR6_A_B 5DDP_D_A 0.93 0.72 0.39 0.69 RNA-binding domain, RBD compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
1A9N_B_Q 5WWE_A_B 0.72 0.6 2.34 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 6DCL_A_D 0.32 0.6 2.71 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 6F4G_B_C 0.94 0.92 0.25 0.79 RNA-binding domain, RBD compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare
1A9N_B_Q 6F4H_A_B 0.81 0.85 0.49 0.5 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_4_G 0.43 0.58 1.31 0.17 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_R_G 0.79 0.68 2.58 0.17 compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare
1A9N_B_Q 7DCO_X_G 0.31 0.63 3.58 0.12 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_p_H 0.32 0.68 0.46 0.29 RNA-binding domain, RBD compare