RNAprotDB

Interface analysis

Common contacts -

1A9N_B	1A9N_Q	5WWE_A	5WWE_B	Conserved?
B:13 [TYR]	Q:10 [C]	A:24 [PHE]	B:1 [A]	✔
B:90 [ASP]	Q:11 [A]	A:99 [ARG]	B:2 [G]	✔
B:90 [ASP]	Q:12 [G]	A:99 [ARG]	B:3 [G]	✔
B:87 [ALA]	Q:10 [C]	A:96 [ALA]	B:1 [A]	✔
B:87 [ALA]	Q:11 [A]	A:96 [ALA]	B:2 [G]	✔
B:11 [THR]	Q:11 [A]	A:22 [LYS]	B:2 [G]	✔
B:88 [LYS]	Q:10 [C]	A:97 [VAL]	B:1 [A]	✔
B:44 [VAL]	Q:12 [G]	A:51 [VAL]	B:3 [G]	✔
B:54 [GLN]	Q:10 [C]	A:64 [PHE]	B:1 [A]	✔
B:46 [LEU]	Q:11 [A]	A:53 [MET]	B:2 [G]	✔
B:46 [LEU]	Q:12 [G]	A:53 [MET]	B:3 [G]	✔
B:86 [TYR]	Q:10 [C]	A:95 [ARG]	B:1 [A]	✔
B:85 [GLN]	Q:10 [C]	A:94 [LYS]	B:1 [A]	✔
B:56 [PHE]	Q:10 [C]	A:66 [PHE]	B:1 [A]	✔
B:56 [PHE]	Q:11 [A]	A:66 [PHE]	B:2 [G]	✔
B:89 [THR]	Q:11 [A]	A:98 [ALA]	B:2 [G]	✔
B:44 [VAL]	Q:11 [A]	A:51 [VAL]	B:2 [G]	❌ 5WWE_A_B
B:89 [THR]	Q:10 [C]	A:98 [ALA]	B:1 [A]	❌ 5WWE_A_B
B:89 [THR]	Q:12 [G]	A:98 [ALA]	B:3 [G]	❌ 5WWE_A_B
B:11 [THR]	Q:12 [G]	A:22 [LYS]	B:3 [G]	❌ 1A9N_B_Q
B:43 [ILE]	Q:12 [G]	A:50 [CYS]	B:3 [G]	❌ 1A9N_B_Q
B:52 [ARG]	Q:10 [C]	A:62 [ARG]	B:1 [A]	❌ 1A9N_B_Q
B:52 [ARG]	Q:12 [G]	A:62 [ARG]	B:3 [G]	❌ 1A9N_B_Q
B:52 [ARG]	Q:11 [A]	A:62 [ARG]	B:2 [G]	❌ 1A9N_B_Q
B:54 [GLN]	Q:11 [A]	A:64 [PHE]	B:2 [G]	❌ 1A9N_B_Q
B:56 [PHE]	Q:12 [G]	A:66 [PHE]	B:3 [G]	❌ 1A9N_B_Q
B:88 [LYS]	Q:11 [A]	A:97 [VAL]	B:2 [G]	❌ 1A9N_B_Q
B:58 [ILE]	Q:11 [A]	A:68 [THR]	B:2 [G]	❌ 5WWE_A:68 no longer at interface
B:51 [MET]	Q:10 [C]	A:61 [SER]	B:1 [A]	❌ 5WWE_A:61 no longer at interface
B:51 [MET]	Q:11 [A]	A:61 [SER]	B:2 [G]	❌ 5WWE_A:61 no longer at interface
B:8 [PRO]	Q:11 [A]	A:19 [GLN]	B:2 [G]	❌ 1A9N_B:8 no longer at interface
B:42 [ASP]	Q:12 [G]	A:49 [ASP]	B:3 [G]	❌ 1A9N_B:42 no longer at interface

Export the table of contacts

Properties of this pair

Common ECOD label(s)	Common RFAM label(s)	Interface TM-score	Interface RMSD	Percentage identity	Protein TM-score	RNA TM-score	Protein coverage	RNA coverage	Percentage conservation	Apolar conservation	H-bond conservation	Percentage switching out
RNA-binding domain, RBD		0.6	2.34	0.20	0.72	0.13	0.74	0.6	0.72	0.77	0.17	0.31

Other pairs involving 1A9N_B_Q or 5WWE_A_B

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Explore both interfaces
1A9N_B_Q	6F4G_B_C	0.94	0.92	0.25	0.79	RNA-binding domain, RBD	compare
1A9N_B_Q	7DCO_R_G	0.79	0.68	2.58	0.17		compare
1A9N_B_Q	6SQN_A_X	0.92	0.87	0.86	0.6	RNA-binding domain, RBD	compare
1A9N_B_Q	7DCO_4_G	0.43	0.58	1.31	0.17	RNA-binding domain, RBD	compare
1A9N_B_Q	6DCL_A_D	0.32	0.6	2.71	0.2	RNA-binding domain, RBD	compare
1A9N_B_Q	5WWE_A_B	0.72	0.6	2.34	0.2	RNA-binding domain, RBD	compare
1A9N_B_Q	1SJ3_P_R	0.83	0.85	0.49	0.55	RNA-binding domain, RBD	compare
1A9N_B_Q	1M5O_C_B	0.86	0.83	0.56	0.43	RNA-binding domain, RBD	compare
1A9N_B_Q	1G2E_A_B	0.54	0.62	3.02	0.16	RNA-binding domain, RBD	compare
1A9N_B_Q	6F4H_A_B	0.81	0.85	0.49	0.5	RNA-binding domain, RBD	compare
1A9N_B_Q	4PR6_A_B	0.81	0.85	0.49	0.54	RNA-binding domain, RBD	compare
1A9N_B_Q	7DCO_p_H	0.32	0.68	0.46	0.29	RNA-binding domain, RBD	compare
1A9N_B_Q	7DCO_X_G	0.31	0.63	3.58	0.12	RNA-binding domain, RBD	compare
1A9N_B_Q	2NZ4_A_P	0.79	0.83	0.54	0.5	RNA-binding domain, RBD	compare
1A9N_B_Q	1URN_A_P	0.78	0.85	0.84	0.58	RNA-binding domain, RBD	compare
1A9N_B_Q	1DRZ_A_B	0.81	0.85	0.47	0.5	RNA-binding domain, RBD	compare
1A9N_B_Q	5DDP_D_A	0.81	0.82	0.42	0.46	RNA-binding domain, RBD	compare
1A9N_B_Q	4ED5_A_D	0.54	0.62	2.45	0.1	RNA-binding domain, RBD	compare
1A9N_B_Q	4PKD_B_V	0.75	0.85	0.6	0.5	RNA-binding domain, RBD	compare
1A9N_B_Q	3MXH_P_R	0.79	0.78	1.0	0.46	RNA-binding domain, RBD	compare
5HO4_A_B	5WWE_A_B	0.93	0.93	0.72	0.6	RNA-binding domain, RBD	compare
5WWE_A_B	5WWF_A_B	0.98	0.88	1.37	0.8	RNA-binding domain, RBD	compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

1A9N_B_Q

6F4G_B_C

0.94