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All interfaces > All interologs > Interface groups > group141 > 1DRZ_A_B

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1DRZ_A
1DRZ_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:6 [THR] B:152 [C] 4.74 24.72
A:11 [THR] B:153 [A] 4.62 82.56
A:13 [TYR] B:151 [G] 3.32 80.44
A:13 [TYR] B:152 [C] 3.45 base/AA stacks 80.44
A:15 [ASN] B:150 [U] 3.86 63.91
A:15 [ASN] B:151 [G] 3.24 base:SC 63.91
A:16 [ASN] B:150 [U] 2.67 base:SC 98.6
A:16 [ASN] B:151 [G] 2.95 base:BB 98.6
A:17 [LEU] B:151 [G] 4.3 77.3
A:19 [GLU] B:148 [A] 4.11 40.4
A:19 [GLU] B:149 [U] 3.04 base:SC 40.4
A:19 [GLU] B:150 [U] 4.22 40.4
A:19 [GLU] B:151 [G] 2.79 base:SC 40.4
A:20 [LYS] B:145 [A] 4.98 B:160 [U] 55.13
A:20 [LYS] B:146 [C] 3.27 B:159 [G] 55.13
A:22 [LYS] B:143 [A] 3.8 B:162 [G] 53.68
A:22 [LYS] B:144 [C] 3.27 B:161 [G] 53.68
A:44 [LEU] B:153 [A] 4.45 1.31
A:46 [SER] B:156 [C] 4.91 22.66
A:46 [SER] B:157 [C] 3.29 22.66
A:47 [ARG] B:143 [A] 4.58 B:162 [G] 50.17
A:47 [ARG] B:144 [C] 4.66 B:161 [G] 50.17
A:47 [ARG] B:157 [C] 4.03 50.17
A:48 [SER] B:157 [C] 3.61 66.38
A:48 [SER] B:158 [G] 3.54 B:147 [C] 66.38
A:49 [LEU] B:148 [A] 3.75 38.1
A:49 [LEU] B:149 [U] 4.13 38.1
A:49 [LEU] B:151 [G] 4.9 38.1
A:49 [LEU] B:157 [C] 4.81 38.1
A:49 [LEU] B:158 [G] 2.68 B:147 [C] 38.1
A:50 [LYS] B:151 [G] 2.63 sugar:BB 53.27
A:51 [MSE] B:151 [G] 2.94 56.63
A:51 [MSE] B:152 [C] 3.77 56.63
A:51 [MSE] B:153 [A] 3.55 56.63
A:52 [ARG] B:148 [A] 2.86 base:SC 78.35
A:52 [ARG] B:149 [U] 3.34 78.35
A:52 [ARG] B:151 [G] 3.19 78.35
A:52 [ARG] B:158 [G] 3.24 B:147 [C] base:SC, base:SC 78.35
A:53 [GLY] B:151 [G] 3.52 94.39
A:54 [GLN] B:151 [G] 3.0 base/AA stacks 85.57
A:54 [GLN] B:152 [C] 3.52 85.57
A:56 [PHE] B:152 [C] 3.61 86.75
A:56 [PHE] B:153 [A] 3.24 base/AA stacks 86.75
A:58 [ILE] B:153 [A] 4.85 64.38
A:80 [LYS] B:150 [U] 2.84 base:SC 71.22
A:83 [ARG] B:150 [U] 2.24 base:SC 52.19
A:85 [GLN] B:152 [C] 2.59 base:SC 35.69
A:86 [TYR] B:152 [C] 3.15 base:BB 22.18
A:87 [ALA] B:152 [C] 3.58 97.1
A:87 [ALA] B:153 [A] 4.14 97.1
A:88 [LYS] B:152 [C] 2.92 base:BB, sugar:SC 58.76
A:88 [LYS] B:153 [A] 4.76 58.76
A:89 [THR] B:152 [C] 4.54 51.35
A:89 [THR] B:153 [A] 2.94 base:BB 51.35
A:89 [THR] B:154 [C] 4.01 51.35
A:90 [ASP] B:153 [A] 3.78 38.7
A:90 [ASP] B:154 [C] 3.15 base:BB 38.7
A:91 [SER] B:153 [A] 2.72 base:SC, base:SC 85.99
A:91 [SER] B:154 [C] 3.45 85.99
A:92 [ASP] B:154 [C] 2.95 base:BB, base:BB base/AA stacks 70.43
A:93 [ILE] B:154 [C] 4.79 24.32

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 1DRZ_A_B A: Protein (u1 small ribonucleoprotein a), Homo sapiens (genetically engineered) B: RNA (hepatitis delta virus genomic ribozyme), Hepatitis delta virus (genetically engineered) P09012 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 7DCO_R_G 0.76 0.51 2.54 0.17 compare
1DRZ_A_B 2NZ4_A_P 0.97 0.65 0.35 0.93 RNA-binding domain, RBD compare
1DRZ_A_B 3MXH_P_R 0.92 0.65 0.96 0.78 RNA-binding domain, RBD compare
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1DRZ_A_B 1M5O_C_B 0.96 0.68 0.4 0.86 RNA-binding domain, RBD compare
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
1DRZ_A_B 6F4G_B_C 0.80 0.83 0.38 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 1DRZ_A_B 0.81 0.85 0.47 0.5 RNA-binding domain, RBD compare
1DRZ_A_B 6F4H_A_B 0.94 0.95 0.38 0.68 RNA-binding domain, RBD compare
1DRZ_A_B 1URN_A_P 0.93 0.95 0.28 0.83 RNA-binding domain, RBD compare
1DRZ_A_B 1SJ3_P_R 0.97 0.95 0.31 0.97 RNA-binding domain, RBD compare
1DRZ_A_B 6SQN_A_X 0.95 0.96 0.29 0.89 RNA-binding domain, RBD compare
1DRZ_A_B 4PR6_A_B 0.99 1.0 0.09 0.92 RNA-binding domain, RBD compare