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All interfaces > All interologs > Interface groups > group141 > 1G2E_A_B vs 6SQN_A_X

Interface analysis


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Common contacts -

1G2E_A
1G2E_B
6SQN_A
6SQN_X
Conserved?
A:84 [PHE] B:9 [U] A:56 [TRP] X:10 [C] ✔
A:84 [PHE] B:10 [U] A:56 [TRP] X:11 [A] ✔
A:44 [ASN] B:8 [U] A:15 [ASN] X:9 [G] ✔
A:116 [ARG] B:9 [U] A:88 [LYS] X:10 [C] ✔
A:118 [SER] B:10 [U] A:90 [ASP] X:11 [A] ✔
A:69 [LYS] B:10 [U] A:44 [LEU] X:11 [A] ✔
A:69 [LYS] B:11 [A] A:44 [LEU] X:12 [C] ✔
A:42 [ILE] B:8 [U] A:13 [TYR] X:9 [G] ✔
A:42 [ILE] B:9 [U] A:13 [TYR] X:10 [C] ✔
A:108 [LYS] B:7 [A] A:80 [LYS] X:8 [U] ✔
A:40 [ASN] B:10 [U] A:11 [THR] X:11 [A] ✔
A:115 [ALA] B:9 [U] A:87 [ALA] X:10 [C] ✔
A:115 [ALA] B:10 [U] A:87 [ALA] X:11 [A] ✔
A:82 [TYR] B:8 [U] A:54 [GLN] X:9 [G] ✔
A:82 [TYR] B:9 [U] A:54 [GLN] X:10 [C] ✔
A:45 [TYR] B:7 [A] A:16 [ASN] X:8 [U] ✔
A:45 [TYR] B:8 [U] A:16 [ASN] X:9 [G] ✔
A:114 [TYR] B:9 [U] A:86 [TYR] X:10 [C] ✔
A:81 [GLY] B:7 [A] A:53 [GLY] X:8 [U] ❌ 6SQN_A_X
A:116 [ARG] B:8 [U] A:88 [LYS] X:9 [G] ❌ 6SQN_A_X
A:118 [SER] B:9 [U] A:90 [ASP] X:10 [C] ❌ 6SQN_A_X
A:117 [PRO] B:9 [U] A:89 [THR] X:10 [C] ❌ 6SQN_A_X
A:74 [LYS] B:11 [A] A:49 [LEU] X:12 [C] ❌ 6SQN_A_X
A:80 [LEU] B:7 [A] A:52 [ARG] X:8 [U] ❌ 6SQN_A_X
A:108 [LYS] B:6 [U] A:80 [LYS] X:7 [U] ❌ 6SQN_A_X
A:82 [TYR] B:10 [U] A:54 [GLN] X:11 [A] ❌ 6SQN_A_X
A:79 [SER] B:7 [A] A:51 [MET] X:8 [U] ❌ 6SQN_A_X
A:113 [SER] B:8 [U] A:85 [GLN] X:9 [G] ❌ 6SQN_A_X
A:44 [ASN] B:7 [A] A:15 [ASN] X:8 [U] ❌ 1G2E_A_B
A:74 [LYS] B:8 [U] A:49 [LEU] X:9 [G] ❌ 1G2E_A_B
A:74 [LYS] B:6 [U] A:49 [LEU] X:7 [U] ❌ 1G2E_A_B
A:79 [SER] B:8 [U] A:51 [MET] X:9 [G] ❌ 1G2E_A_B
A:79 [SER] B:10 [U] A:51 [MET] X:11 [A] ❌ 1G2E_A_B
A:80 [LEU] B:8 [U] A:52 [ARG] X:9 [G] ❌ 1G2E_A_B
A:80 [LEU] B:6 [U] A:52 [ARG] X:7 [U] ❌ 1G2E_A_B
A:81 [GLY] B:8 [U] A:53 [GLY] X:9 [G] ❌ 1G2E_A_B
A:113 [SER] B:9 [U] A:85 [GLN] X:10 [C] ❌ 1G2E_A_B
A:117 [PRO] B:11 [A] A:89 [THR] X:12 [C] ❌ 1G2E_A_B
A:117 [PRO] B:10 [U] A:89 [THR] X:11 [A] ❌ 1G2E_A_B
A:118 [SER] B:11 [A] A:90 [ASP] X:12 [C] ❌ 1G2E_A_B
A:71 [VAL] B:10 [U] A:46 [SER] X:11 [A] ❌ 6SQN_A:46 no longer at interface
A:48 [GLN] B:6 [U] A:20 [LYS] X:7 [U] ❌ 6SQN_A:20 no longer at interface
A:48 [GLN] B:7 [A] A:20 [LYS] X:8 [U] ❌ 6SQN_A:20 no longer at interface
A:111 [LYS] B:8 [U] A:83 [ARG] X:9 [G] ❌ 6SQN_A:83 no longer at interface
A:72 [ARG] B:11 [A] A:47 [ARG] X:12 [C] ❌ 6SQN_A:47 no longer at interface
A:46 [LEU] B:8 [U] A:17 [LEU] X:9 [G] ❌ 1G2E_A:46 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.64 3.14 0.10 0.7 0.04 0.67 0.6 0.55 0.64 0.11 0.21


Other pairs involving 1G2E_A_B or 6SQN_A_X

Total number of entries: 21

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 1G2E_A_B 0.54 0.62 3.02 0.16 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1G2E_A_B 4ED5_A_D 0.92 0.95 0.7 0.8 RNA-binding domain, RBD compare
1G2E_A_B 6F4G_B_C 0.57 0.61 3.03 0.15 RNA-binding domain, RBD compare
1G2E_A_B 6F4H_A_B 0.57 0.64 3.02 0.1 RNA-binding domain, RBD compare
1DRZ_A_B 6SQN_A_X 0.95 0.96 0.29 0.89 RNA-binding domain, RBD compare
6F4G_B_C 6SQN_A_X 0.91 0.87 0.39 0.6 RNA-binding domain, RBD compare
4ED5_A_D 6SQN_A_X 0.55 0.65 2.53 0.1 RNA-binding domain, RBD compare
1G2E_A_B 6SQN_A_X 0.55 0.64 3.14 0.1 RNA-binding domain, RBD compare
4PR6_A_B 6SQN_A_X 0.95 0.96 0.3 0.89 RNA-binding domain, RBD compare
3MXH_P_R 6SQN_A_X 0.91 0.88 0.96 0.7 RNA-binding domain, RBD compare
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
5TF6_A_B 6SQN_A_X 0.56 0.63 2.54 0.1 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
6DCL_A_D 6SQN_A_X 0.28 0.63 1.96 0.13 RNA-binding domain, RBD compare
4N0T_A_B 6SQN_A_X 0.59 0.65 3.87 0.0 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
2NZ4_A_P 6SQN_A_X 0.96 0.93 0.39 0.8 RNA-binding domain, RBD compare
6F4H_A_B 6SQN_A_X 0.93 0.92 0.38 0.74 RNA-binding domain, RBD compare
6SQN_A_X 7DCO_R_G 0.73 0.72 2.65 0.17 compare
6SQN_A_X 7DCO_X_G 0.45 0.66 2.52 0.12 RNA-binding domain, RBD compare