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All interfaces > All interologs > Interface groups > group141 > 1M5O_C_B vs 3MXH_P_R

Interface analysis


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Common contacts -

1M5O_C
1M5O_B
3MXH_P
3MXH_R
Conserved?
C:19 [GLU] B:36 [A] P:19 [GLU] R:660 [A] ✔
C:19 [GLU] B:37 [U] P:19 [GLU] R:661 [U] ✔
C:19 [GLU] B:38 [U] P:19 [GLU] R:662 [U] ✔
C:19 [GLU] B:39 [G] P:19 [GLU] R:663 [G] ✔
C:13 [TYR] B:39 [G] P:13 [TYR] R:663 [G] ✔
C:13 [TYR] B:40 [C] P:13 [TYR] R:664 [C] ✔
C:91 [SER] B:41 [A] P:90 [ASP] R:665 [A] ✔
C:91 [SER] B:42 [C] P:90 [ASP] R:666 [C] ✔
C:15 [ASN] B:38 [U] P:15 [ASN] R:662 [U] ✔
C:15 [ASN] B:39 [G] P:15 [ASN] R:663 [G] ✔
C:90 [ASP] B:41 [A] P:89 [THR] R:665 [A] ✔
C:90 [ASP] B:42 [C] P:89 [THR] R:666 [C] ✔
C:87 [ALA] B:40 [C] P:87 [ALA] R:664 [C] ✔
C:87 [ALA] B:41 [A] P:87 [ALA] R:665 [A] ✔
C:17 [LEU] B:39 [G] P:17 [LEU] R:663 [G] ✔
C:11 [THR] B:41 [A] P:11 [THR] R:665 [A] ✔
C:49 [LEU] B:36 [A] P:49 [LEU] R:660 [A] ✔
C:49 [LEU] B:37 [U] P:49 [LEU] R:661 [U] ✔
C:49 [LEU] B:39 [G] P:49 [LEU] R:663 [G] ✔
C:49 [LEU] B:46 [G] P:49 [LEU] R:75 [G] ✔
C:22 [LYS] B:31 [A] P:22 [LYS] R:61 [A] ✔
C:22 [LYS] B:32 [A] P:22 [LYS] R:62 [A] ✔
C:53 [GLY] B:39 [G] P:53 [GLY] R:663 [G] ✔
C:54 [GLN] B:39 [G] P:54 [GLN] R:663 [G] ✔
C:54 [GLN] B:40 [C] P:54 [GLN] R:664 [C] ✔
C:48 [SER] B:45 [C] P:48 [SER] R:669 [C] ✔
C:48 [SER] B:46 [G] P:48 [SER] R:75 [G] ✔
C:51 [MET] B:39 [G] P:51 [MET] R:663 [G] ✔
C:51 [MET] B:40 [C] P:51 [MET] R:664 [C] ✔
C:51 [MET] B:41 [A] P:51 [MET] R:665 [A] ✔
C:86 [TYR] B:40 [C] P:86 [TYR] R:664 [C] ✔
C:85 [GLN] B:40 [C] P:85 [GLN] R:664 [C] ✔
C:80 [LYS] B:38 [U] P:80 [LYS] R:662 [U] ✔
C:20 [LYS] B:34 [C] P:20 [LYS] R:64 [C] ✔
C:16 [ASN] B:38 [U] P:16 [ASN] R:662 [U] ✔
C:16 [ASN] B:39 [G] P:16 [ASN] R:663 [G] ✔
C:44 [LEU] B:41 [A] P:44 [LEU] R:665 [A] ✔
C:44 [LEU] B:42 [C] P:44 [LEU] R:666 [C] ✔
C:56 [PHE] B:40 [C] P:56 [PHE] R:664 [C] ✔
C:56 [PHE] B:41 [A] P:56 [PHE] R:665 [A] ✔
C:92 [ASP] B:42 [C] P:91 [SER] R:666 [C] ✔
C:52 [ARG] B:36 [A] P:52 [ARG] R:660 [A] ✔
C:52 [ARG] B:37 [U] P:52 [ARG] R:661 [U] ✔
C:52 [ARG] B:39 [G] P:52 [ARG] R:663 [G] ✔
C:52 [ARG] B:46 [G] P:52 [ARG] R:75 [G] ✔
C:89 [THR] B:40 [C] P:88 [LYS] R:664 [C] ✔
C:89 [THR] B:41 [A] P:88 [LYS] R:665 [A] ✔
C:93 [ILE] B:42 [C] P:92 [ASP] R:666 [C] ✔
C:50 [LYS] B:39 [G] P:50 [LYS] R:663 [G] ✔
C:49 [LEU] B:45 [C] P:49 [LEU] R:669 [C] ❌ 3MXH_P_R
C:89 [THR] B:42 [C] P:88 [LYS] R:666 [C] ❌ 3MXH_P_R
C:47 [ARG] B:45 [C] P:47 [ARG] R:669 [C] ❌ 3MXH_P_R
C:47 [ARG] B:46 [G] P:47 [ARG] R:75 [G] ❌ 3MXH_P_R
C:20 [LYS] B:32 [A] P:20 [LYS] R:62 [A] ❌ 1M5O_C_B
C:47 [ARG] B:32 [A] P:47 [ARG] R:62 [A] ❌ 1M5O_C_B
C:50 [LYS] B:45 [C] P:50 [LYS] R:669 [C] ❌ 1M5O_C_B
C:50 [LYS] B:40 [C] P:50 [LYS] R:664 [C] ❌ 1M5O_C_B
C:50 [LYS] B:41 [A] P:50 [LYS] R:665 [A] ❌ 1M5O_C_B
C:46 [SER] B:44 [C] P:46 [SER] R:668 [C] ❌ 3MXH_P:46, 3MXH_R:668 no longer at interface
C:92 [ASP] B:43 [U] P:91 [SER] R:667 [U] ❌ 3MXH_R:667 no longer at interface
C:20 [LYS] B:33 [C] P:20 [LYS] R:63 [A] ❌ 1M5O_B:33 no longer at interface
C:46 [SER] B:45 [C] P:46 [SER] R:669 [C] ❌ 3MXH_P:46 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.68 1.06 0.81 0.97 0.31 1.0 0.92 0.94 0.85 0.55 0.31


Other pairs involving 1M5O_C_B or 3MXH_P_R

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 1M5O_C_B 0.86 0.83 0.56 0.43 RNA-binding domain, RBD compare
1A9N_B_Q 3MXH_P_R 0.79 0.78 1.0 0.46 RNA-binding domain, RBD compare
1DRZ_A_B 3MXH_P_R 0.92 0.65 0.96 0.78 RNA-binding domain, RBD compare
1DRZ_A_B 1M5O_C_B 0.96 0.68 0.4 0.86 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
1M5O_C_B 6F4H_A_B 0.95 0.95 0.48 0.7 RNA-binding domain, RBD compare
1M5O_C_B 3MXH_P_R 0.94 0.68 1.06 0.81 RNA-binding domain, RBD compare
1M5O_C_B 4PR6_A_B 0.97 0.69 0.39 0.85 RNA-binding domain, RBD compare
1M5O_C_B 2NZ4_A_P 0.97 0.63 0.49 0.86 RNA-binding domain, RBD compare
1M5O_C_B 1SJ3_P_R 0.96 0.69 0.42 0.91 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
1M5O_C_B 6F4G_B_C 0.81 0.81 0.4 0.5 RNA-binding domain, RBD compare
1SJ3_P_R 3MXH_P_R 0.95 0.64 1.0 0.78 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
2NZ4_A_P 3MXH_P_R 0.94 0.6 0.92 0.81 RNA-binding domain, RBD compare
3MXH_P_R 6F4H_A_B 0.95 0.91 0.91 0.59 RNA-binding domain, RBD compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
3MXH_P_R 6SQN_A_X 0.91 0.88 0.96 0.7 RNA-binding domain, RBD compare
3MXH_P_R 4PR6_A_B 0.93 0.65 0.96 0.78 RNA-binding domain, RBD compare
3MXH_P_R 6F4G_B_C 0.80 0.77 0.94 0.46 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare