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All interfaces > All interologs > Interface groups > group141 > 1SJ3_P_R

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1SJ3_P
1SJ3_R
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
P:6 [THR] R:152 [C] 4.05 24.72
P:11 [THR] R:153 [A] 4.59 82.56
P:13 [TYR] R:151 [G] 3.29 80.44
P:13 [TYR] R:152 [C] 3.53 base/AA stacks 80.44
P:15 [ASN] R:150 [U] 3.76 63.91
P:15 [ASN] R:151 [G] 3.03 base:SC 63.91
P:16 [ASN] R:150 [U] 2.88 base:SC 98.6
P:16 [ASN] R:151 [G] 2.94 base:BB 98.6
P:17 [LEU] R:151 [G] 4.4 77.3
P:19 [GLU] R:148 [A] 4.23 40.4
P:19 [GLU] R:149 [U] 2.69 base:SC 40.4
P:19 [GLU] R:150 [U] 4.47 40.4
P:19 [GLU] R:151 [G] 3.13 base:SC 40.4
P:22 [LYS] R:143 [A] 4.13 R:162 [G] 53.68
P:22 [LYS] R:144 [C] 2.78 R:161 [G] 53.68
P:44 [LEU] R:153 [A] 3.44 1.31
P:44 [LEU] R:154 [C] 4.37 1.31
P:46 [SER] R:157 [C] 3.56 22.66
P:47 [ARG] R:143 [A] 4.61 R:162 [G] 50.17
P:47 [ARG] R:157 [C] 4.5 50.17
P:48 [SER] R:157 [C] 3.9 66.38
P:48 [SER] R:158 [G] 3.67 R:147 [C] 66.38
P:49 [LEU] R:148 [A] 3.95 38.1
P:49 [LEU] R:149 [U] 4.2 38.1
P:49 [LEU] R:151 [G] 4.81 38.1
P:49 [LEU] R:157 [C] 4.77 38.1
P:49 [LEU] R:158 [G] 2.94 R:147 [C] 38.1
P:50 [LYS] R:151 [G] 2.85 sugar:BB 53.27
P:50 [LYS] R:152 [C] 4.03 53.27
P:50 [LYS] R:153 [A] 3.57 53.27
P:51 [MET] R:151 [G] 3.35 56.63
P:51 [MET] R:152 [C] 3.52 56.63
P:51 [MET] R:153 [A] 3.48 56.63
P:52 [ARG] R:148 [A] 2.76 base:SC 78.35
P:52 [ARG] R:149 [U] 3.1 78.35
P:52 [ARG] R:151 [G] 3.45 78.35
P:52 [ARG] R:158 [G] 2.89 R:147 [C] base:SC, base:SC 78.35
P:53 [GLY] R:151 [G] 3.53 94.39
P:54 [GLN] R:151 [G] 2.95 base/AA stacks 85.57
P:54 [GLN] R:152 [C] 3.59 85.57
P:56 [PHE] R:152 [C] 3.55 86.75
P:56 [PHE] R:153 [A] 3.32 base/AA stacks 86.75
P:58 [ILE] R:153 [A] 4.93 64.38
P:80 [LYS] R:150 [U] 2.78 base:SC 71.22
P:83 [ARG] R:150 [U] 2.66 base:SC 52.19
P:85 [GLN] R:152 [C] 3.83 35.69
P:86 [TYR] R:152 [C] 3.05 base:BB 22.18
P:87 [ALA] R:152 [C] 3.45 97.1
P:87 [ALA] R:153 [A] 4.05 97.1
P:88 [LYS] R:152 [C] 3.08 base:BB 58.76
P:89 [THR] R:152 [C] 4.61 51.35
P:89 [THR] R:153 [A] 2.87 base:BB 51.35
P:89 [THR] R:154 [C] 3.07 base:SC 51.35
P:90 [ASP] R:153 [A] 3.8 38.7
P:90 [ASP] R:154 [C] 3.01 base:BB 38.7
P:91 [SER] R:153 [A] 2.67 base:SC 85.99
P:91 [SER] R:154 [C] 3.34 85.99
P:92 [ASP] R:154 [C] 2.91 base:BB, base:BB base/AA stacks 70.43
P:93 [ILE] R:154 [C] 3.73 24.32

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 1SJ3_P_R P: Small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) R: Precursor form of the hepatitis delta virus ribozyme, Hepatitis delta virus (genetically engineered) P09012 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 1SJ3_P_R 0.83 0.85 0.49 0.55 RNA-binding domain, RBD compare
1DRZ_A_B 1SJ3_P_R 0.97 0.95 0.31 0.97 RNA-binding domain, RBD compare
1M5O_C_B 1SJ3_P_R 0.96 0.69 0.42 0.91 RNA-binding domain, RBD compare
1SJ3_P_R 7DCO_R_G 0.76 0.5 2.55 0.17 compare
1SJ3_P_R 6F4G_B_C 0.83 0.83 0.4 0.55 RNA-binding domain, RBD compare
1SJ3_P_R 6F4H_A_B 0.97 0.96 0.38 0.71 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 4PR6_A_B 0.97 0.95 0.29 0.97 RNA-binding domain, RBD compare
1SJ3_P_R 3MXH_P_R 0.95 0.64 1.0 0.78 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 2NZ4_A_P 0.94 0.65 0.37 0.91 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare