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All interfaces > All interologs > Interface groups > group141 > 1URN_A_P

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

1URN_A
1URN_P
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:5 [GLU] P:10 [C] 3.63 0.0
A:11 [THR] P:11 [A] 4.43 0.0
A:13 [TYR] P:9 [G] 3.53 0.0
A:13 [TYR] P:10 [C] 3.47 base/AA stacks 0.0
A:15 [ASN] P:8 [U] 3.61 0.0
A:15 [ASN] P:9 [G] 2.99 base:SC 0.0
A:16 [ASN] P:8 [U] 2.81 base:SC 0.0
A:16 [ASN] P:9 [G] 3.04 base:BB 0.0
A:17 [LEU] P:9 [G] 4.33 0.0
A:19 [GLU] P:6 [A] 4.2 0.0
A:19 [GLU] P:7 [U] 2.78 base:SC 0.0
A:19 [GLU] P:8 [U] 4.71 0.0
A:19 [GLU] P:9 [G] 2.61 base:SC, base:SC 0.0
A:22 [LYS] P:1 [A] 3.88 0.0
A:22 [LYS] P:2 [A] 2.96 P:19 [U] 0.0
A:44 [LEU] P:11 [A] 3.58 0.0
A:44 [LEU] P:12 [C] 3.97 0.0
A:47 [ARG] P:16 [G] 4.99 P:5 [C] 0.0
A:48 [SER] P:15 [C] 4.15 0.0
A:48 [SER] P:16 [G] 3.65 P:5 [C] 0.0
A:49 [LEU] P:6 [A] 3.42 0.0
A:49 [LEU] P:7 [U] 4.13 0.0
A:49 [LEU] P:9 [G] 4.58 0.0
A:49 [LEU] P:15 [C] 4.88 0.0
A:49 [LEU] P:16 [G] 3.07 P:5 [C] 0.0
A:50 [LYS] P:9 [G] 2.5 sugar:BB 0.0
A:50 [LYS] P:10 [C] 4.36 0.0
A:50 [LYS] P:11 [A] 3.1 0.0
A:50 [LYS] P:16 [G] 4.86 P:5 [C] 0.0
A:51 [MET] P:9 [G] 4.61 0.0
A:51 [MET] P:10 [C] 3.9 0.0
A:51 [MET] P:11 [A] 3.2 0.0
A:52 [ARG] P:6 [A] 2.76 base:SC 0.0
A:52 [ARG] P:7 [U] 3.16 0.0
A:52 [ARG] P:9 [G] 3.02 0.0
A:52 [ARG] P:16 [G] 3.01 P:5 [C] base:SC, base:SC 0.0
A:53 [GLY] P:9 [G] 3.35 0.0
A:54 [GLN] P:9 [G] 3.12 base/AA stacks 0.0
A:54 [GLN] P:10 [C] 3.33 0.0
A:56 [PHE] P:10 [C] 3.45 0.0
A:56 [PHE] P:11 [A] 3.42 base/AA stacks 0.0
A:80 [LYS] P:8 [U] 3.07 base:SC 0.0
A:83 [ARG] P:8 [U] 4.83 0.0
A:85 [GLN] P:10 [C] 2.97 base:SC 0.0
A:86 [TYR] P:10 [C] 2.96 base:BB 0.0
A:87 [ALA] P:10 [C] 3.51 0.0
A:87 [ALA] P:11 [A] 3.93 0.0
A:88 [LYS] P:10 [C] 3.03 base:BB, sugar:SC 0.0
A:89 [THR] P:10 [C] 4.63 0.0
A:89 [THR] P:11 [A] 2.86 base:BB 0.0
A:89 [THR] P:12 [C] 3.33 base:SC 0.0
A:90 [ASP] P:11 [A] 3.52 0.0
A:90 [ASP] P:12 [C] 2.86 base:BB 0.0
A:91 [SER] P:11 [A] 2.76 base:SC 0.0
A:91 [SER] P:12 [C] 3.4 0.0
A:92 [ASP] P:12 [C] 3.03 base:BB base/AA stacks 0.0
A:92 [ASP] P:13 [U] 4.51 0.0
A:93 [ILE] P:12 [C] 4.8 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 1URN_A_P A: Protein (u1a), Homo sapiens (genetically engineered) P: N/A P09012 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 19

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 1URN_A_P 0.93 0.95 0.28 0.83 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1URN_A_P 5HO4_A_B 0.68 0.59 2.13 0.0 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1URN_A_P 7DCO_4_G 0.23 0.6 1.36 0.17 RNA-binding domain, RBD compare
1URN_A_P 5TF6_A_B 0.54 0.62 3.87 0.0 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
1URN_A_P 6DCL_A_D 0.33 0.61 1.95 0.17 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_X_G 0.42 0.64 2.53 0.12 RNA-binding domain, RBD compare
1URN_A_P 4PR6_A_B 0.93 0.94 0.27 0.83 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare