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All interfaces > All interologs > Interface groups > group141 > 1URN_A_P vs 4PKD_B_V

Interface analysis


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Common contacts -

1URN_A
1URN_P
4PKD_B
4PKD_V
Conserved?
A:19 [GLU] P:6 [A] B:19 [GLU] V:65 [A] ✔
A:19 [GLU] P:7 [U] B:19 [GLU] V:66 [U] ✔
A:19 [GLU] P:8 [U] B:19 [GLU] V:67 [U] ✔
A:19 [GLU] P:9 [G] B:19 [GLU] V:68 [G] ✔
A:13 [TYR] P:9 [G] B:13 [TYR] V:68 [G] ✔
A:13 [TYR] P:10 [C] B:13 [TYR] V:69 [C] ✔
A:91 [SER] P:11 [A] B:91 [SER] V:70 [A] ✔
A:91 [SER] P:12 [C] B:91 [SER] V:71 [C] ✔
A:15 [ASN] P:8 [U] B:15 [ASN] V:67 [U] ✔
A:15 [ASN] P:9 [G] B:15 [ASN] V:68 [G] ✔
A:90 [ASP] P:11 [A] B:90 [ASP] V:70 [A] ✔
A:90 [ASP] P:12 [C] B:90 [ASP] V:71 [C] ✔
A:87 [ALA] P:10 [C] B:87 [ALA] V:69 [C] ✔
A:87 [ALA] P:11 [A] B:87 [ALA] V:70 [A] ✔
A:17 [LEU] P:9 [G] B:17 [LEU] V:68 [G] ✔
A:11 [THR] P:11 [A] B:11 [THR] V:70 [A] ✔
A:88 [LYS] P:10 [C] B:88 [LYS] V:69 [C] ✔
A:49 [LEU] P:6 [A] B:49 [LEU] V:65 [A] ✔
A:49 [LEU] P:7 [U] B:49 [LEU] V:66 [U] ✔
A:49 [LEU] P:9 [G] B:49 [LEU] V:68 [G] ✔
A:49 [LEU] P:16 [G] B:49 [LEU] V:75 [G] ✔
A:22 [LYS] P:1 [A] B:22 [LYS] V:59 [GTP] ✔
A:22 [LYS] P:2 [A] B:22 [LYS] V:60 [G] ✔
A:53 [GLY] P:9 [G] B:53 [GLY] V:68 [G] ✔
A:54 [GLN] P:9 [G] B:54 [GLN] V:68 [G] ✔
A:54 [GLN] P:10 [C] B:54 [GLN] V:69 [C] ✔
A:48 [SER] P:15 [C] B:48 [SER] V:74 [C] ✔
A:48 [SER] P:16 [G] B:48 [SER] V:75 [G] ✔
A:51 [MET] P:9 [G] B:51 [MET] V:68 [G] ✔
A:51 [MET] P:10 [C] B:51 [MET] V:69 [C] ✔
A:51 [MET] P:11 [A] B:51 [MET] V:70 [A] ✔
A:86 [TYR] P:10 [C] B:86 [TYR] V:69 [C] ✔
A:85 [GLN] P:10 [C] B:85 [GLN] V:69 [C] ✔
A:80 [LYS] P:8 [U] B:80 [LYS] V:67 [U] ✔
A:16 [ASN] P:8 [U] B:16 [ASN] V:67 [U] ✔
A:16 [ASN] P:9 [G] B:16 [ASN] V:68 [G] ✔
A:44 [LEU] P:11 [A] B:44 [LEU] V:70 [A] ✔
A:44 [LEU] P:12 [C] B:44 [LEU] V:71 [C] ✔
A:56 [PHE] P:10 [C] B:56 [PHE] V:69 [C] ✔
A:56 [PHE] P:11 [A] B:56 [PHE] V:70 [A] ✔
A:92 [ASP] P:12 [C] B:92 [ASP] V:71 [C] ✔
A:92 [ASP] P:13 [U] B:92 [ASP] V:72 [U] ✔
A:52 [ARG] P:6 [A] B:52 [ARG] V:65 [A] ✔
A:52 [ARG] P:7 [U] B:52 [ARG] V:66 [U] ✔
A:52 [ARG] P:9 [G] B:52 [ARG] V:68 [G] ✔
A:52 [ARG] P:16 [G] B:52 [ARG] V:75 [G] ✔
A:89 [THR] P:10 [C] B:89 [THR] V:69 [C] ✔
A:89 [THR] P:11 [A] B:89 [THR] V:70 [A] ✔
A:89 [THR] P:12 [C] B:89 [THR] V:71 [C] ✔
A:47 [ARG] P:16 [G] B:47 [ARG] V:75 [G] ✔
A:50 [LYS] P:9 [G] B:50 [LYS] V:68 [G] ✔
A:50 [LYS] P:11 [A] B:50 [LYS] V:70 [A] ✔
A:49 [LEU] P:15 [C] B:49 [LEU] V:74 [C] ❌ 4PKD_B_V
A:50 [LYS] P:10 [C] B:50 [LYS] V:69 [C] ❌ 4PKD_B_V
A:50 [LYS] P:16 [G] B:50 [LYS] V:75 [G] ❌ 4PKD_B_V
A:47 [ARG] P:1 [A] B:47 [ARG] V:59 [GTP] ❌ 1URN_A_P
A:47 [ARG] P:15 [C] B:47 [ARG] V:74 [C] ❌ 1URN_A_P
A:50 [LYS] P:12 [C] B:50 [LYS] V:71 [C] ❌ 1URN_A_P
A:83 [ARG] P:8 [U] B:83 [ARG] V:67 [U] ❌ 4PKD_B:83 no longer at interface
A:93 [ILE] P:12 [C] B:93 [ILE] V:71 [C] ❌ 4PKD_B:93 no longer at interface
A:23 [LYS] P:1 [A] B:23 [LYS] V:59 [GTP] ❌ 1URN_A:23 no longer at interface
A:24 [ASP] P:1 [A] B:24 [ASP] V:59 [GTP] ❌ 1URN_A:24 no longer at interface
A:46 [SER] P:15 [C] B:46 [SER] V:74 [C] ❌ 1URN_A:46 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.92 0.29 0.83 0.95 0.4 0.9 1.0 0.93 0.97 0.76 0.45


Other pairs involving 1URN_A_P or 4PKD_B_V

Total number of entries: 30

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 1URN_A_P 0.93 0.95 0.28 0.83 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
1URN_A_P 4PR6_A_B 0.93 0.94 0.27 0.83 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
1URN_A_P 5HO4_A_B 0.68 0.59 2.13 0.0 RNA-binding domain, RBD compare
1URN_A_P 5TF6_A_B 0.54 0.62 3.87 0.0 RNA-binding domain, RBD compare
1URN_A_P 6DCL_A_D 0.33 0.61 1.95 0.17 RNA-binding domain, RBD compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
1URN_A_P 7DCO_4_G 0.23 0.6 1.36 0.17 RNA-binding domain, RBD compare
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
1URN_A_P 7DCO_X_G 0.42 0.64 2.53 0.12 RNA-binding domain, RBD compare