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All interfaces > All interologs > Interface groups > group141 > 1URN_A_P vs 5DDP_D_A

Interface analysis


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Common contacts -

1URN_A
1URN_P
5DDP_D
5DDP_A
Conserved?
A:19 [GLU] P:6 [A] D:18 [GLU] A:35 [A] ✔
A:19 [GLU] P:7 [U] D:18 [GLU] A:36 [U] ✔
A:19 [GLU] P:8 [U] D:18 [GLU] A:37 [U] ✔
A:19 [GLU] P:9 [G] D:18 [GLU] A:38 [G] ✔
A:5 [GLU] P:10 [C] D:4 [GLU] A:39 [C] ✔
A:13 [TYR] P:9 [G] D:12 [TYR] A:38 [G] ✔
A:13 [TYR] P:10 [C] D:12 [TYR] A:39 [C] ✔
A:91 [SER] P:11 [A] D:90 [SER] A:40 [A] ✔
A:91 [SER] P:12 [C] D:90 [SER] A:41 [C] ✔
A:15 [ASN] P:8 [U] D:14 [ASN] A:37 [U] ✔
A:15 [ASN] P:9 [G] D:14 [ASN] A:38 [G] ✔
A:90 [ASP] P:11 [A] D:89 [ASP] A:40 [A] ✔
A:90 [ASP] P:12 [C] D:89 [ASP] A:41 [C] ✔
A:87 [ALA] P:10 [C] D:86 [ALA] A:39 [C] ✔
A:87 [ALA] P:11 [A] D:86 [ALA] A:40 [A] ✔
A:17 [LEU] P:9 [G] D:16 [LEU] A:38 [G] ✔
A:11 [THR] P:11 [A] D:10 [THR] A:40 [A] ✔
A:88 [LYS] P:10 [C] D:87 [LYS] A:39 [C] ✔
A:49 [LEU] P:6 [A] D:48 [LEU] A:35 [A] ✔
A:49 [LEU] P:7 [U] D:48 [LEU] A:36 [U] ✔
A:49 [LEU] P:9 [G] D:48 [LEU] A:38 [G] ✔
A:49 [LEU] P:15 [C] D:48 [LEU] A:44 [C] ✔
A:49 [LEU] P:16 [G] D:48 [LEU] A:45 [G] ✔
A:22 [LYS] P:1 [A] D:21 [LYS] A:30 [G] ✔
A:22 [LYS] P:2 [A] D:21 [LYS] A:31 [G] ✔
A:53 [GLY] P:9 [G] D:52 [GLY] A:38 [G] ✔
A:54 [GLN] P:9 [G] D:53 [GLN] A:38 [G] ✔
A:54 [GLN] P:10 [C] D:53 [GLN] A:39 [C] ✔
A:48 [SER] P:15 [C] D:47 [SER] A:44 [C] ✔
A:48 [SER] P:16 [G] D:47 [SER] A:45 [G] ✔
A:51 [MET] P:9 [G] D:50 [MET] A:38 [G] ✔
A:51 [MET] P:10 [C] D:50 [MET] A:39 [C] ✔
A:51 [MET] P:11 [A] D:50 [MET] A:40 [A] ✔
A:86 [TYR] P:10 [C] D:85 [TYR] A:39 [C] ✔
A:85 [GLN] P:10 [C] D:84 [GLN] A:39 [C] ✔
A:80 [LYS] P:8 [U] D:79 [LYS] A:37 [U] ✔
A:16 [ASN] P:8 [U] D:15 [ASN] A:37 [U] ✔
A:16 [ASN] P:9 [G] D:15 [ASN] A:38 [G] ✔
A:44 [LEU] P:11 [A] D:43 [LEU] A:40 [A] ✔
A:44 [LEU] P:12 [C] D:43 [LEU] A:41 [C] ✔
A:56 [PHE] P:10 [C] D:55 [PHE] A:39 [C] ✔
A:56 [PHE] P:11 [A] D:55 [PHE] A:40 [A] ✔
A:92 [ASP] P:12 [C] D:91 [ASP] A:41 [C] ✔
A:92 [ASP] P:13 [U] D:91 [ASP] A:42 [U] ✔
A:52 [ARG] P:6 [A] D:51 [ARG] A:35 [A] ✔
A:52 [ARG] P:7 [U] D:51 [ARG] A:36 [U] ✔
A:52 [ARG] P:9 [G] D:51 [ARG] A:38 [G] ✔
A:52 [ARG] P:16 [G] D:51 [ARG] A:45 [G] ✔
A:89 [THR] P:10 [C] D:88 [THR] A:39 [C] ✔
A:89 [THR] P:11 [A] D:88 [THR] A:40 [A] ✔
A:89 [THR] P:12 [C] D:88 [THR] A:41 [C] ✔
A:47 [ARG] P:16 [G] D:46 [ARG] A:45 [G] ✔
A:93 [ILE] P:12 [C] D:92 [ILE] A:41 [C] ✔
A:50 [LYS] P:9 [G] D:49 [LYS] A:38 [G] ✔
A:50 [LYS] P:10 [C] D:49 [LYS] A:39 [C] ✔
A:50 [LYS] P:11 [A] D:49 [LYS] A:40 [A] ✔
A:50 [LYS] P:16 [G] D:49 [LYS] A:45 [G] ✔
A:47 [ARG] P:15 [C] D:46 [ARG] A:44 [C] ❌ 1URN_A_P
A:47 [ARG] P:1 [A] D:46 [ARG] A:30 [G] ❌ 1URN_A_P
A:47 [ARG] P:2 [A] D:46 [ARG] A:31 [G] ❌ 1URN_A_P
A:83 [ARG] P:8 [U] D:82 [ARG] A:37 [U] ❌ 5DDP_D:82 no longer at interface
A:20 [LYS] P:2 [A] D:19 [LYS] A:31 [G] ❌ 1URN_A:20 no longer at interface
A:23 [LYS] P:1 [A] D:22 [LYS] A:30 [G] ❌ 1URN_A:23 no longer at interface
A:46 [SER] P:15 [C] D:45 [SER] A:44 [C] ❌ 1URN_A:46 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.95 0.36 0.83 0.99 0.43 0.97 1.0 0.97 0.98 0.75 0.57


Other pairs involving 1URN_A_P or 5DDP_D_A

Total number of entries: 30

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1DRZ_A_B 1URN_A_P 0.93 0.95 0.28 0.83 RNA-binding domain, RBD compare
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare
1URN_A_P 5HO4_A_B 0.68 0.59 2.13 0.0 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1URN_A_P 7DCO_4_G 0.23 0.6 1.36 0.17 RNA-binding domain, RBD compare
1URN_A_P 5TF6_A_B 0.54 0.62 3.87 0.0 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
1URN_A_P 6DCL_A_D 0.33 0.61 1.95 0.17 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_X_G 0.42 0.64 2.53 0.12 RNA-binding domain, RBD compare
1URN_A_P 4PR6_A_B 0.93 0.94 0.27 0.83 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PR6_A_B 5DDP_D_A 0.93 0.72 0.39 0.69 RNA-binding domain, RBD compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare