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All interfaces > All interologs > Interface groups > group141 > 1URN_A_P vs 5HO4_A_B

Interface analysis


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Common contacts -

1URN_A
1URN_P
5HO4_A
5HO4_B
Conserved?
A:13 [TYR] P:9 [G] A:24 [PHE] B:1 [A] ✔
A:13 [TYR] P:10 [C] A:24 [PHE] B:2 [A] ✔
A:15 [ASN] P:9 [G] A:26 [GLY] B:1 [A] ✔
A:90 [ASP] P:11 [A] A:99 [ARG] B:3 [G] ✔
A:90 [ASP] P:12 [C] A:99 [ARG] B:4 [G] ✔
A:87 [ALA] P:10 [C] A:96 [ALA] B:2 [A] ✔
A:87 [ALA] P:11 [A] A:96 [ALA] B:3 [G] ✔
A:11 [THR] P:11 [A] A:22 [LYS] B:3 [G] ✔
A:88 [LYS] P:10 [C] A:97 [VAL] B:2 [A] ✔
A:53 [GLY] P:9 [G] A:63 [GLY] B:1 [A] ✔
A:54 [GLN] P:9 [G] A:64 [PHE] B:1 [A] ✔
A:54 [GLN] P:10 [C] A:64 [PHE] B:2 [A] ✔
A:86 [TYR] P:10 [C] A:95 [ARG] B:2 [A] ✔
A:85 [GLN] P:10 [C] A:94 [LYS] B:2 [A] ✔
A:16 [ASN] P:9 [G] A:27 [GLY] B:1 [A] ✔
A:44 [LEU] P:12 [C] A:51 [VAL] B:4 [G] ✔
A:56 [PHE] P:10 [C] A:66 [PHE] B:2 [A] ✔
A:56 [PHE] P:11 [A] A:66 [PHE] B:3 [G] ✔
A:52 [ARG] P:9 [G] A:62 [ARG] B:1 [A] ✔
A:89 [THR] P:11 [A] A:98 [ALA] B:3 [G] ✔
A:44 [LEU] P:11 [A] A:51 [VAL] B:3 [G] ❌ 5HO4_A_B
A:89 [THR] P:10 [C] A:98 [ALA] B:2 [A] ❌ 5HO4_A_B
A:89 [THR] P:12 [C] A:98 [ALA] B:4 [G] ❌ 5HO4_A_B
A:11 [THR] P:12 [C] A:22 [LYS] B:4 [G] ❌ 1URN_A_P
A:52 [ARG] P:11 [A] A:62 [ARG] B:3 [G] ❌ 1URN_A_P
A:52 [ARG] P:10 [C] A:62 [ARG] B:2 [A] ❌ 1URN_A_P
A:52 [ARG] P:12 [C] A:62 [ARG] B:4 [G] ❌ 1URN_A_P
A:54 [GLN] P:11 [A] A:64 [PHE] B:3 [G] ❌ 1URN_A_P
A:83 [ARG] P:9 [G] A:92 [GLU] B:1 [A] ❌ 1URN_A_P
A:88 [LYS] P:11 [A] A:97 [VAL] B:3 [G] ❌ 1URN_A_P
A:19 [GLU] P:9 [G] A:30 [PHE] B:1 [A] ❌ 5HO4_A:30 no longer at interface
A:17 [LEU] P:9 [G] A:28 [LEU] B:1 [A] ❌ 5HO4_A:28 no longer at interface
A:49 [LEU] P:9 [G] A:56 [PRO] B:1 [A] ❌ 5HO4_A:56 no longer at interface
A:51 [MET] P:9 [G] A:61 [SER] B:1 [A] ❌ 5HO4_A:61 no longer at interface
A:51 [MET] P:10 [C] A:61 [SER] B:2 [A] ❌ 5HO4_A:61 no longer at interface
A:51 [MET] P:11 [A] A:61 [SER] B:3 [G] ❌ 5HO4_A:61 no longer at interface
A:8 [PRO] P:11 [A] A:19 [GLN] B:3 [G] ❌ 1URN_A:8 no longer at interface
A:42 [ASP] P:12 [C] A:49 [ASP] B:4 [G] ❌ 1URN_A:42 no longer at interface
A:43 [ILE] P:12 [C] A:50 [CYS] B:4 [G] ❌ 1URN_A:43 no longer at interface
A:46 [SER] P:11 [A] A:53 [MET] B:3 [G] ❌ 1URN_A:46 no longer at interface
A:46 [SER] P:12 [C] A:53 [MET] B:4 [G] ❌ 1URN_A:46 no longer at interface
A:81 [PRO] P:9 [G] A:90 [VAL] B:1 [A] ❌ 1URN_A:81 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.59 2.13 0.00 0.7 0.07 0.7 0.67 0.68 0.73 0.18 0.55


Other pairs involving 1URN_A_P or 5HO4_A_B

Total number of entries: 22

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 1URN_A_P 0.93 0.95 0.28 0.83 RNA-binding domain, RBD compare
5HO4_A_B 5WWF_A_B 0.87 0.94 0.85 0.4 RNA-binding domain, RBD compare
5HO4_A_B 5WWE_A_B 0.93 0.93 0.72 0.6 RNA-binding domain, RBD compare
5HO4_A_B 6DCL_A_C 0.98 0.92 0.75 0.4 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1URN_A_P 5HO4_A_B 0.68 0.59 2.13 0.0 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1URN_A_P 7DCO_4_G 0.23 0.6 1.36 0.17 RNA-binding domain, RBD compare
1URN_A_P 5TF6_A_B 0.54 0.62 3.87 0.0 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
1URN_A_P 6DCL_A_D 0.33 0.61 1.95 0.17 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_X_G 0.42 0.64 2.53 0.12 RNA-binding domain, RBD compare
1URN_A_P 4PR6_A_B 0.93 0.94 0.27 0.83 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare