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All interfaces > All interologs > Interface groups > group141 > 2NZ4_A_P vs 4PKD_B_V

Interface analysis


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Common contacts -

2NZ4_A
2NZ4_P
4PKD_B
4PKD_V
Conserved?
A:19 [GLU] P:17B [A] B:19 [GLU] V:65 [A] ✔
A:19 [GLU] P:17C [U] B:19 [GLU] V:66 [U] ✔
A:19 [GLU] P:17D [U] B:19 [GLU] V:67 [U] ✔
A:19 [GLU] P:17E [G] B:19 [GLU] V:68 [G] ✔
A:13 [TYR] P:17E [G] B:13 [TYR] V:68 [G] ✔
A:13 [TYR] P:17F [C] B:13 [TYR] V:69 [C] ✔
A:91 [SER] P:17G [A] B:91 [SER] V:70 [A] ✔
A:91 [SER] P:17H [C] B:91 [SER] V:71 [C] ✔
A:15 [ASN] P:17D [U] B:15 [ASN] V:67 [U] ✔
A:15 [ASN] P:17E [G] B:15 [ASN] V:68 [G] ✔
A:90 [ASP] P:17G [A] B:90 [ASP] V:70 [A] ✔
A:90 [ASP] P:17H [C] B:90 [ASP] V:71 [C] ✔
A:87 [ALA] P:17F [C] B:87 [ALA] V:69 [C] ✔
A:87 [ALA] P:17G [A] B:87 [ALA] V:70 [A] ✔
A:17 [LEU] P:17E [G] B:17 [LEU] V:68 [G] ✔
A:11 [THR] P:17G [A] B:11 [THR] V:70 [A] ✔
A:88 [LYS] P:17F [C] B:88 [LYS] V:69 [C] ✔
A:49 [LEU] P:17B [A] B:49 [LEU] V:65 [A] ✔
A:49 [LEU] P:17C [U] B:49 [LEU] V:66 [U] ✔
A:49 [LEU] P:17E [G] B:49 [LEU] V:68 [G] ✔
A:49 [LEU] P:17L [G] B:49 [LEU] V:75 [G] ✔
A:22 [LYS] P:13 [G] B:22 [LYS] V:59 [GTP] ✔
A:22 [LYS] P:14 [C] B:22 [LYS] V:60 [G] ✔
A:53 [GLY] P:17E [G] B:53 [GLY] V:68 [G] ✔
A:54 [GLN] P:17E [G] B:54 [GLN] V:68 [G] ✔
A:54 [GLN] P:17F [C] B:54 [GLN] V:69 [C] ✔
A:48 [SER] P:17K [C] B:48 [SER] V:74 [C] ✔
A:48 [SER] P:17L [G] B:48 [SER] V:75 [G] ✔
A:51 [MET] P:17E [G] B:51 [MET] V:68 [G] ✔
A:51 [MET] P:17F [C] B:51 [MET] V:69 [C] ✔
A:51 [MET] P:17G [A] B:51 [MET] V:70 [A] ✔
A:86 [TYR] P:17F [C] B:86 [TYR] V:69 [C] ✔
A:85 [GLN] P:17F [C] B:85 [GLN] V:69 [C] ✔
A:80 [LYS] P:17D [U] B:80 [LYS] V:67 [U] ✔
A:46 [SER] P:17J [C] B:46 [SER] V:73 [C] ✔
A:46 [SER] P:17K [C] B:46 [SER] V:74 [C] ✔
A:16 [ASN] P:17D [U] B:16 [ASN] V:67 [U] ✔
A:16 [ASN] P:17E [G] B:16 [ASN] V:68 [G] ✔
A:44 [LEU] P:17G [A] B:44 [LEU] V:70 [A] ✔
A:44 [LEU] P:17H [C] B:44 [LEU] V:71 [C] ✔
A:56 [PHE] P:17F [C] B:56 [PHE] V:69 [C] ✔
A:56 [PHE] P:17G [A] B:56 [PHE] V:70 [A] ✔
A:92 [ASP] P:17H [C] B:92 [ASP] V:71 [C] ✔
A:92 [ASP] P:17I [U] B:92 [ASP] V:72 [U] ✔
A:52 [ARG] P:17B [A] B:52 [ARG] V:65 [A] ✔
A:52 [ARG] P:17C [U] B:52 [ARG] V:66 [U] ✔
A:52 [ARG] P:17E [G] B:52 [ARG] V:68 [G] ✔
A:52 [ARG] P:17L [G] B:52 [ARG] V:75 [G] ✔
A:89 [THR] P:17F [C] B:89 [THR] V:69 [C] ✔
A:89 [THR] P:17G [A] B:89 [THR] V:70 [A] ✔
A:89 [THR] P:17H [C] B:89 [THR] V:71 [C] ✔
A:47 [ARG] P:13 [G] B:47 [ARG] V:59 [GTP] ✔
A:47 [ARG] P:17K [C] B:47 [ARG] V:74 [C] ✔
A:47 [ARG] P:17L [G] B:47 [ARG] V:75 [G] ✔
A:50 [LYS] P:17E [G] B:50 [LYS] V:68 [G] ✔
A:47 [ARG] P:14 [C] B:47 [ARG] V:60 [G] ❌ 4PKD_B_V
A:50 [LYS] P:17L [G] B:50 [LYS] V:75 [G] ❌ 4PKD_B_V
A:24 [ASP] P:13 [G] B:24 [ASP] V:59 [GTP] ❌ 2NZ4_A_P
A:50 [LYS] P:17H [C] B:50 [LYS] V:71 [C] ❌ 2NZ4_A_P
A:50 [LYS] P:17G [A] B:50 [LYS] V:70 [A] ❌ 2NZ4_A_P
A:20 [LYS] P:15 [A] B:20 [LYS] V:62 [U] ❌ 4PKD_B:20, 4PKD_V:62 no longer at interface
A:20 [LYS] P:16 [C] B:20 [LYS] V:63 [C] ❌ 4PKD_B:20, 4PKD_V:63 no longer at interface
A:20 [LYS] P:14 [C] B:20 [LYS] V:60 [G] ❌ 4PKD_B:20 no longer at interface
A:93 [ILE] P:17H [C] B:93 [ILE] V:71 [C] ❌ 4PKD_B:93 no longer at interface
A:23 [LYS] P:13 [G] B:23 [LYS] V:59 [GTP] ❌ 2NZ4_A:23 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.52 0.55 0.69 0.99 0.37 0.93 0.81 0.94 0.97 0.00 0.50


Other pairs involving 2NZ4_A_P or 4PKD_B_V

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 2NZ4_A_P 0.79 0.83 0.54 0.5 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1DRZ_A_B 2NZ4_A_P 0.97 0.65 0.35 0.93 RNA-binding domain, RBD compare
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1M5O_C_B 2NZ4_A_P 0.97 0.63 0.49 0.86 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 2NZ4_A_P 0.94 0.65 0.37 0.91 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
2NZ4_A_P 3MXH_P_R 0.94 0.6 0.92 0.81 RNA-binding domain, RBD compare
2NZ4_A_P 6F4G_B_C 0.85 0.8 0.45 0.43 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 4PR6_A_B 0.96 0.66 0.34 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 6F4H_A_B 0.92 0.95 0.41 0.7 RNA-binding domain, RBD compare
2NZ4_A_P 6SQN_A_X 0.96 0.93 0.39 0.8 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare