Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 3MXH_P
|
3MXH_R
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| P:11 [THR] | R:665 [A] | 4.75 | 80.53 | |||
| P:13 [TYR] | R:663 [G] | 3.44 | base:SC | 77.6 | ||
| P:13 [TYR] | R:664 [C] | 3.56 | base/AA stacks | 77.6 | ||
| P:15 [ASN] | R:662 [U] | 3.44 | base:SC | 70.52 | ||
| P:15 [ASN] | R:663 [G] | 2.94 | base:SC | 70.52 | ||
| P:16 [ASN] | R:662 [U] | 2.59 | base:SC | 98.47 | ||
| P:16 [ASN] | R:663 [G] | 3.35 | base:BB | 98.47 | ||
| P:17 [LEU] | R:663 [G] | 4.4 | 82.75 | |||
| P:19 [GLU] | R:660 [A] | 4.22 | 32.04 | |||
| P:19 [GLU] | R:661 [U] | 2.78 | base:SC | 32.04 | ||
| P:19 [GLU] | R:662 [U] | 3.85 | 32.04 | |||
| P:19 [GLU] | R:663 [G] | 3.27 | base:SC | 32.04 | ||
| P:20 [LYS] | R:62 [A] | 4.51 | 54.27 | |||
| P:20 [LYS] | R:63 [A] | 4.73 | 54.27 | |||
| P:20 [LYS] | R:64 [C] | 4.59 | R:76 [G] | 54.27 | ||
| P:22 [LYS] | R:61 [A] | 4.28 | R:77 [U] | 42.01 | ||
| P:22 [LYS] | R:62 [A] | 3.65 | 42.01 | |||
| P:44 [LEU] | R:665 [A] | 3.75 | 1.83 | |||
| P:44 [LEU] | R:666 [C] | 4.95 | 1.83 | |||
| P:47 [ARG] | R:62 [A] | 4.22 | 39.99 | |||
| P:48 [SER] | R:75 [G] | 3.49 | R:65 [C] | 58.62 | ||
| P:48 [SER] | R:669 [C] | 4.06 | 58.62 | |||
| P:49 [LEU] | R:75 [G] | 3.02 | R:65 [C] | 36.02 | ||
| P:49 [LEU] | R:660 [A] | 4.09 | 36.02 | |||
| P:49 [LEU] | R:661 [U] | 4.29 | 36.02 | |||
| P:49 [LEU] | R:663 [G] | 4.32 | 36.02 | |||
| P:50 [LYS] | R:663 [G] | 2.55 | sugar:BB | 47.99 | ||
| P:50 [LYS] | R:664 [C] | 4.3 | 47.99 | |||
| P:50 [LYS] | R:665 [A] | 2.97 | 47.99 | |||
| P:50 [LYS] | R:669 [C] | 4.69 | 47.99 | |||
| P:51 [MET] | R:663 [G] | 4.68 | 62.04 | |||
| P:51 [MET] | R:664 [C] | 4.66 | 62.04 | |||
| P:51 [MET] | R:665 [A] | 3.36 | 62.04 | |||
| P:52 [ARG] | R:75 [G] | 2.68 | R:65 [C] | base:SC, base:SC | 80.23 | |
| P:52 [ARG] | R:660 [A] | 2.62 | base:SC | 80.23 | ||
| P:52 [ARG] | R:661 [U] | 3.86 | 80.23 | |||
| P:52 [ARG] | R:663 [G] | 3.2 | 80.23 | |||
| P:53 [GLY] | R:663 [G] | 3.82 | 91.64 | |||
| P:54 [GLN] | R:663 [G] | 3.04 | base/AA stacks | 82.8 | ||
| P:54 [GLN] | R:664 [C] | 3.69 | 82.8 | |||
| P:56 [PHE] | R:664 [C] | 3.48 | 88.23 | |||
| P:56 [PHE] | R:665 [A] | 3.53 | base/AA stacks | 88.23 | ||
| P:80 [LYS] | R:662 [U] | 2.63 | base:SC | 71.17 | ||
| P:85 [GLN] | R:664 [C] | 3.34 | 40.01 | |||
| P:86 [TYR] | R:664 [C] | 2.93 | base:BB | 37.15 | ||
| P:87 [ALA] | R:664 [C] | 3.6 | 88.86 | |||
| P:87 [ALA] | R:665 [A] | 4.27 | 88.86 | |||
| P:88 [LYS] | R:664 [C] | 3.7 | base:BB | 56.17 | ||
| P:88 [LYS] | R:665 [A] | 4.77 | 56.17 | |||
| P:89 [THR] | R:665 [A] | 2.56 | base:BB | 35.63 | ||
| P:89 [THR] | R:666 [C] | 2.59 | base:BB, base:SC | 35.63 | ||
| P:90 [ASP] | R:665 [A] | 4.07 | 35.42 | |||
| P:90 [ASP] | R:666 [C] | 4.52 | 35.42 | |||
| P:91 [SER] | R:666 [C] | 3.52 | base:BB | 91.14 | ||
| P:92 [ASP] | R:666 [C] | 3.48 | 74.01 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group141 | 3MXH_P_R | P: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) R: C-di-gmp riboswitch | P09012 | RNA-binding domain, RBD | Cyclic di-GMP-I riboswitch | ✘ |
|
Interologs
Total number of interologs for this interface: 12