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All interfaces > All interologs > Interface groups > group141 > 3MXH_P_R vs 5DDP_D_A

Interface analysis


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Common contacts -

3MXH_P
3MXH_R
5DDP_D
5DDP_A
Conserved?
P:19 [GLU] R:660 [A] D:18 [GLU] A:35 [A] ✔
P:19 [GLU] R:661 [U] D:18 [GLU] A:36 [U] ✔
P:19 [GLU] R:662 [U] D:18 [GLU] A:37 [U] ✔
P:19 [GLU] R:663 [G] D:18 [GLU] A:38 [G] ✔
P:13 [TYR] R:663 [G] D:12 [TYR] A:38 [G] ✔
P:13 [TYR] R:664 [C] D:12 [TYR] A:39 [C] ✔
P:91 [SER] R:666 [C] D:91 [ASP] A:41 [C] ✔
P:15 [ASN] R:662 [U] D:14 [ASN] A:37 [U] ✔
P:15 [ASN] R:663 [G] D:14 [ASN] A:38 [G] ✔
P:90 [ASP] R:665 [A] D:90 [SER] A:40 [A] ✔
P:90 [ASP] R:666 [C] D:90 [SER] A:41 [C] ✔
P:87 [ALA] R:664 [C] D:86 [ALA] A:39 [C] ✔
P:87 [ALA] R:665 [A] D:86 [ALA] A:40 [A] ✔
P:17 [LEU] R:663 [G] D:16 [LEU] A:38 [G] ✔
P:11 [THR] R:665 [A] D:10 [THR] A:40 [A] ✔
P:88 [LYS] R:664 [C] D:88 [THR] A:39 [C] ✔
P:88 [LYS] R:665 [A] D:88 [THR] A:40 [A] ✔
P:49 [LEU] R:75 [G] D:48 [LEU] A:45 [G] ✔
P:49 [LEU] R:660 [A] D:48 [LEU] A:35 [A] ✔
P:49 [LEU] R:661 [U] D:48 [LEU] A:36 [U] ✔
P:49 [LEU] R:663 [G] D:48 [LEU] A:38 [G] ✔
P:22 [LYS] R:61 [A] D:21 [LYS] A:30 [G] ✔
P:22 [LYS] R:62 [A] D:21 [LYS] A:31 [G] ✔
P:53 [GLY] R:663 [G] D:52 [GLY] A:38 [G] ✔
P:54 [GLN] R:663 [G] D:53 [GLN] A:38 [G] ✔
P:54 [GLN] R:664 [C] D:53 [GLN] A:39 [C] ✔
P:48 [SER] R:75 [G] D:47 [SER] A:45 [G] ✔
P:48 [SER] R:669 [C] D:47 [SER] A:44 [C] ✔
P:51 [MET] R:663 [G] D:50 [MET] A:38 [G] ✔
P:51 [MET] R:664 [C] D:50 [MET] A:39 [C] ✔
P:51 [MET] R:665 [A] D:50 [MET] A:40 [A] ✔
P:86 [TYR] R:664 [C] D:85 [TYR] A:39 [C] ✔
P:85 [GLN] R:664 [C] D:84 [GLN] A:39 [C] ✔
P:80 [LYS] R:662 [U] D:79 [LYS] A:37 [U] ✔
P:20 [LYS] R:62 [A] D:19 [LYS] A:31 [G] ✔
P:16 [ASN] R:662 [U] D:15 [ASN] A:37 [U] ✔
P:16 [ASN] R:663 [G] D:15 [ASN] A:38 [G] ✔
P:44 [LEU] R:665 [A] D:43 [LEU] A:40 [A] ✔
P:44 [LEU] R:666 [C] D:43 [LEU] A:41 [C] ✔
P:56 [PHE] R:664 [C] D:55 [PHE] A:39 [C] ✔
P:56 [PHE] R:665 [A] D:55 [PHE] A:40 [A] ✔
P:92 [ASP] R:666 [C] D:92 [ILE] A:41 [C] ✔
P:52 [ARG] R:75 [G] D:51 [ARG] A:45 [G] ✔
P:52 [ARG] R:660 [A] D:51 [ARG] A:35 [A] ✔
P:52 [ARG] R:661 [U] D:51 [ARG] A:36 [U] ✔
P:52 [ARG] R:663 [G] D:51 [ARG] A:38 [G] ✔
P:89 [THR] R:665 [A] D:89 [ASP] A:40 [A] ✔
P:89 [THR] R:666 [C] D:89 [ASP] A:41 [C] ✔
P:47 [ARG] R:62 [A] D:46 [ARG] A:31 [G] ✔
P:50 [LYS] R:663 [G] D:49 [LYS] A:38 [G] ✔
P:50 [LYS] R:664 [C] D:49 [LYS] A:39 [C] ✔
P:50 [LYS] R:665 [A] D:49 [LYS] A:40 [A] ✔
P:50 [LYS] R:669 [C] D:49 [LYS] A:44 [C] ❌ 5DDP_D_A
P:47 [ARG] R:669 [C] D:46 [ARG] A:44 [C] ❌ 3MXH_P_R
P:47 [ARG] R:61 [A] D:46 [ARG] A:30 [G] ❌ 3MXH_P_R
P:47 [ARG] R:75 [G] D:46 [ARG] A:45 [G] ❌ 3MXH_P_R
P:49 [LEU] R:669 [C] D:48 [LEU] A:44 [C] ❌ 3MXH_P_R
P:50 [LYS] R:75 [G] D:49 [LYS] A:45 [G] ❌ 3MXH_P_R
P:88 [LYS] R:666 [C] D:88 [THR] A:41 [C] ❌ 3MXH_P_R
P:20 [LYS] R:63 [A] D:19 [LYS] A:32 [U] ❌ 5DDP_A:32 no longer at interface
P:20 [LYS] R:64 [C] D:19 [LYS] A:33 [C] ❌ 5DDP_A:33 no longer at interface
P:22 [LYS] R:60 [U] D:21 [LYS] A:29 [A] ❌ 3MXH_R:60 no longer at interface
P:47 [ARG] R:60 [U] D:46 [ARG] A:29 [A] ❌ 3MXH_R:60 no longer at interface
P:91 [SER] R:667 [U] D:91 [ASP] A:42 [U] ❌ 3MXH_R:667 no longer at interface
P:23 [LYS] R:61 [A] D:22 [LYS] A:30 [G] ❌ 3MXH_P:23 no longer at interface
P:46 [SER] R:669 [C] D:45 [SER] A:44 [C] ❌ 3MXH_P:46 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.68 0.89 0.69 0.97 0.28 1.0 0.85 0.95 0.83 0.62 0.50


Other pairs involving 3MXH_P_R or 5DDP_D_A

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 3MXH_P_R 0.92 0.65 0.96 0.78 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
1A9N_B_Q 3MXH_P_R 0.79 0.78 1.0 0.46 RNA-binding domain, RBD compare
1M5O_C_B 3MXH_P_R 0.94 0.68 1.06 0.81 RNA-binding domain, RBD compare
2NZ4_A_P 3MXH_P_R 0.94 0.6 0.92 0.81 RNA-binding domain, RBD compare
1SJ3_P_R 3MXH_P_R 0.95 0.64 1.0 0.78 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
3MXH_P_R 4PR6_A_B 0.93 0.65 0.96 0.78 RNA-binding domain, RBD compare
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
4PR6_A_B 5DDP_D_A 0.93 0.72 0.39 0.69 RNA-binding domain, RBD compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
3MXH_P_R 6F4G_B_C 0.80 0.77 0.94 0.46 RNA-binding domain, RBD compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare
3MXH_P_R 6F4H_A_B 0.95 0.91 0.91 0.59 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare
3MXH_P_R 6SQN_A_X 0.91 0.88 0.96 0.7 RNA-binding domain, RBD compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare