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All interfaces > All interologs > Interface groups > group141 > 4N0T_A_B vs 6F4H_A_B

Interface analysis


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Common contacts -

4N0T_A
4N0T_B
6F4H_A
6F4H_B
Conserved?
A:254 [CYS] B:41 [A] A:50 [GLY] B:10 [G] ✔
A:215 [ARG] B:40 [A] A:12 [ASN] B:9 [U] ✔
A:215 [ARG] B:41 [A] A:12 [ASN] B:10 [G] ✔
A:288 [ASP] B:42 [A] A:85 [LYS] B:11 [C] ✔
A:253 [ASN] B:39 [G] A:49 [ARG] B:8 [U] ✔
A:253 [ASN] B:41 [A] A:49 [ARG] B:10 [G] ✔
A:211 [GLU] B:43 [C] A:8 [THR] B:12 [A] ✔
A:241 [ASN] B:43 [C] A:41 [VAL] B:12 [A] ✔
A:255 [CYS] B:41 [A] A:51 [GLN] B:10 [G] ✔
A:255 [CYS] B:42 [A] A:51 [GLN] B:11 [C] ✔
A:251 [PHE] B:41 [A] A:48 [MET] B:10 [G] ✔
A:213 [MET] B:41 [A] A:10 [TYR] B:10 [G] ✔
A:213 [MET] B:42 [A] A:10 [TYR] B:11 [C] ✔
A:216 [ASN] B:40 [A] A:13 [ASN] B:9 [U] ✔
A:257 [PHE] B:42 [A] A:53 [PHE] B:11 [C] ✔
A:257 [PHE] B:43 [C] A:53 [PHE] B:12 [A] ✔
A:243 [PRO] B:43 [C] A:43 [LEU] B:12 [A] ✔
A:246 [GLN] B:41 [A] A:46 [LEU] B:10 [G] ✔
A:290 [LYS] B:43 [C] A:87 [ASP] B:12 [A] ✔
A:290 [LYS] B:44 [A] A:87 [ASP] B:13 [C] ✔
A:287 [ALA] B:42 [A] A:84 [SER] B:11 [C] ✔
A:287 [ALA] B:43 [C] A:84 [SER] B:12 [A] ✔
A:215 [ARG] B:42 [A] A:12 [ASN] B:11 [C] ❌ 6F4H_A_B
A:288 [ASP] B:43 [C] A:85 [LYS] B:12 [A] ❌ 6F4H_A_B
A:253 [ASN] B:40 [A] A:49 [ARG] B:9 [U] ❌ 6F4H_A_B
A:211 [GLU] B:44 [A] A:8 [THR] B:13 [C] ❌ 6F4H_A_B
A:241 [ASN] B:44 [A] A:41 [VAL] B:13 [C] ❌ 6F4H_A_B
A:251 [PHE] B:40 [A] A:48 [MET] B:9 [U] ❌ 6F4H_A_B
A:216 [ASN] B:39 [G] A:13 [ASN] B:8 [U] ❌ 6F4H_A_B
A:243 [PRO] B:41 [A] A:43 [LEU] B:10 [G] ❌ 6F4H_A_B
A:243 [PRO] B:42 [A] A:43 [LEU] B:11 [C] ❌ 6F4H_A_B
A:244 [ALA] B:41 [A] A:44 [LYS] B:10 [G] ❌ 6F4H_A_B
A:290 [LYS] B:42 [A] A:87 [ASP] B:11 [C] ❌ 6F4H_A_B
A:216 [ASN] B:41 [A] A:13 [ASN] B:10 [G] ❌ 4N0T_A_B
A:246 [GLN] B:39 [G] A:46 [LEU] B:8 [U] ❌ 4N0T_A_B
A:251 [PHE] B:43 [C] A:48 [MET] B:12 [A] ❌ 4N0T_A_B
A:251 [PHE] B:42 [A] A:48 [MET] B:11 [C] ❌ 4N0T_A_B
A:283 [SER] B:40 [A] A:80 [GLN] B:9 [U] ❌ 4N0T_A_B
A:289 [LYS] B:43 [C] A:86 [SER] B:12 [A] ❌ 4N0T_A_B
A:289 [LYS] B:42 [A] A:86 [SER] B:11 [C] ❌ 4N0T_A_B
A:289 [LYS] B:44 [A] A:86 [SER] B:13 [C] ❌ 4N0T_A_B
A:239 [LYS] B:44 [A] A:39 [ASP] B:13 [C] ❌ 6F4H_A:39 no longer at interface
A:242 [ILE] B:43 [C] A:42 [ALA] B:12 [A] ❌ 6F4H_A:42 no longer at interface
A:217 [LEU] B:41 [A] A:14 [LEU] B:10 [G] ❌ 4N0T_A:217 no longer at interface
A:219 [THR] B:39 [G] A:16 [GLU] B:8 [U] ❌ 4N0T_A:219 no longer at interface
A:219 [THR] B:41 [A] A:16 [GLU] B:10 [G] ❌ 4N0T_A:219 no longer at interface
A:249 [HIS] B:43 [C] A:47 [LYS] B:12 [A] ❌ 4N0T_A:249 no longer at interface
A:249 [HIS] B:41 [A] A:47 [LYS] B:10 [G] ❌ 4N0T_A:249 no longer at interface
A:249 [HIS] B:42 [A] A:47 [LYS] B:11 [C] ❌ 4N0T_A:249 no longer at interface
A:259 [VAL] B:43 [C] A:55 [ILE] B:12 [A] ❌ 4N0T_A:259 no longer at interface
A:280 [ARG] B:40 [A] A:77 [LYS] B:9 [U] ❌ 4N0T_A:280 no longer at interface
A:285 [SER] B:42 [A] A:82 [ALA] B:11 [C] ❌ 4N0T_A:285 no longer at interface
A:286 [LEU] B:42 [A] A:83 [TYR] B:11 [C] ❌ 4N0T_A:286 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.64 3.75 0.00 0.75 0.25 0.58 0.5 0.56 0.59 0.11 0.39


Other pairs involving 4N0T_A_B or 6F4H_A_B

Total number of entries: 24

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 6F4H_A_B 0.81 0.85 0.49 0.5 RNA-binding domain, RBD compare
1DRZ_A_B 6F4H_A_B 0.94 0.95 0.38 0.68 RNA-binding domain, RBD compare
1G2E_A_B 6F4H_A_B 0.57 0.64 3.02 0.1 RNA-binding domain, RBD compare
1M5O_C_B 6F4H_A_B 0.95 0.95 0.48 0.7 RNA-binding domain, RBD compare
1SJ3_P_R 6F4H_A_B 0.97 0.96 0.38 0.71 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
2NZ4_A_P 6F4H_A_B 0.92 0.95 0.41 0.7 RNA-binding domain, RBD compare
3MXH_P_R 6F4H_A_B 0.95 0.91 0.91 0.59 RNA-binding domain, RBD compare
4ED5_A_D 6F4H_A_B 0.56 0.65 2.49 0.1 RNA-binding domain, RBD compare
4N0T_A_B 6SQN_A_X 0.59 0.65 3.87 0.0 RNA-binding domain, RBD compare
4N0T_A_B 6F4G_B_C 0.58 0.61 3.62 0.0 RNA-binding domain, RBD compare
4N0T_A_B 5TF6_A_B 0.98 0.95 0.87 0.96 RNA-binding domain, RBD U6 spliceosomal RNA compare
4N0T_A_B 6F4H_A_B 0.56 0.64 3.75 0.0 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PR6_A_B 6F4H_A_B 0.94 0.95 0.38 0.68 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare
5TF6_A_B 6F4H_A_B 0.57 0.64 3.83 0.0 RNA-binding domain, RBD compare
6DCL_A_D 6F4H_A_B 0.33 0.63 1.94 0.17 RNA-binding domain, RBD compare
6F4G_B_C 6F4H_A_B 0.81 0.87 0.36 0.5 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_4_G 0.35 0.61 1.28 0.17 RNA-binding domain, RBD compare
6F4H_A_B 6SQN_A_X 0.93 0.92 0.38 0.74 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_R_G 0.77 0.7 2.58 0.17 compare
6F4H_A_B 7DCO_X_G 0.43 0.65 2.51 0.12 RNA-binding domain, RBD compare