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All interfaces > All interologs > Interface groups > group141 > 4N0T_A_B vs 6SQN_A_X

Interface analysis


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Common contacts -

4N0T_A
4N0T_B
6SQN_A
6SQN_X
Conserved?
A:254 [CYS] B:41 [A] A:53 [GLY] X:9 [G] ✔
A:215 [ARG] B:40 [A] A:15 [ASN] X:8 [U] ✔
A:215 [ARG] B:41 [A] A:15 [ASN] X:9 [G] ✔
A:288 [ASP] B:42 [A] A:88 [LYS] X:10 [C] ✔
A:253 [ASN] B:39 [G] A:52 [ARG] X:7 [U] ✔
A:253 [ASN] B:41 [A] A:52 [ARG] X:9 [G] ✔
A:211 [GLU] B:43 [C] A:11 [THR] X:11 [A] ✔
A:241 [ASN] B:43 [C] A:44 [LEU] X:11 [A] ✔
A:241 [ASN] B:44 [A] A:44 [LEU] X:12 [C] ✔
A:255 [CYS] B:41 [A] A:54 [GLN] X:9 [G] ✔
A:255 [CYS] B:42 [A] A:54 [GLN] X:10 [C] ✔
A:251 [PHE] B:41 [A] A:51 [MET] X:9 [G] ✔
A:213 [MET] B:41 [A] A:13 [TYR] X:9 [G] ✔
A:213 [MET] B:42 [A] A:13 [TYR] X:10 [C] ✔
A:216 [ASN] B:40 [A] A:16 [ASN] X:8 [U] ✔
A:257 [PHE] B:42 [A] A:56 [TRP] X:10 [C] ✔
A:257 [PHE] B:43 [C] A:56 [TRP] X:11 [A] ✔
A:246 [GLN] B:41 [A] A:49 [LEU] X:9 [G] ✔
A:290 [LYS] B:43 [C] A:90 [ASP] X:11 [A] ✔
A:290 [LYS] B:44 [A] A:90 [ASP] X:12 [C] ✔
A:287 [ALA] B:42 [A] A:87 [ALA] X:10 [C] ✔
A:287 [ALA] B:43 [C] A:87 [ALA] X:11 [A] ✔
A:215 [ARG] B:42 [A] A:15 [ASN] X:10 [C] ❌ 6SQN_A_X
A:288 [ASP] B:43 [C] A:88 [LYS] X:11 [A] ❌ 6SQN_A_X
A:253 [ASN] B:40 [A] A:52 [ARG] X:8 [U] ❌ 6SQN_A_X
A:211 [GLU] B:44 [A] A:11 [THR] X:12 [C] ❌ 6SQN_A_X
A:251 [PHE] B:40 [A] A:51 [MET] X:8 [U] ❌ 6SQN_A_X
A:216 [ASN] B:39 [G] A:16 [ASN] X:7 [U] ❌ 6SQN_A_X
A:290 [LYS] B:42 [A] A:90 [ASP] X:10 [C] ❌ 6SQN_A_X
A:216 [ASN] B:41 [A] A:16 [ASN] X:9 [G] ❌ 4N0T_A_B
A:246 [GLN] B:39 [G] A:49 [LEU] X:7 [U] ❌ 4N0T_A_B
A:251 [PHE] B:43 [C] A:51 [MET] X:11 [A] ❌ 4N0T_A_B
A:289 [LYS] B:44 [A] A:89 [THR] X:12 [C] ❌ 4N0T_A_B
A:289 [LYS] B:43 [C] A:89 [THR] X:11 [A] ❌ 4N0T_A_B
A:239 [LYS] B:44 [A] A:42 [ASP] X:12 [C] ❌ 6SQN_A:42 no longer at interface
A:242 [ILE] B:43 [C] A:45 [VAL] X:11 [A] ❌ 6SQN_A:45 no longer at interface
A:243 [PRO] B:41 [A] A:46 [SER] X:9 [G] ❌ 6SQN_A:46 no longer at interface
A:243 [PRO] B:42 [A] A:46 [SER] X:10 [C] ❌ 6SQN_A:46 no longer at interface
A:243 [PRO] B:43 [C] A:46 [SER] X:11 [A] ❌ 6SQN_A:46 no longer at interface
A:244 [ALA] B:41 [A] A:47 [ARG] X:9 [G] ❌ 6SQN_A:47 no longer at interface
A:217 [LEU] B:41 [A] A:17 [LEU] X:9 [G] ❌ 4N0T_A:217 no longer at interface
A:219 [THR] B:41 [A] A:19 [GLU] X:9 [G] ❌ 4N0T_A:219 no longer at interface
A:219 [THR] B:40 [A] A:19 [GLU] X:8 [U] ❌ 4N0T_A:219 no longer at interface
A:219 [THR] B:39 [G] A:19 [GLU] X:7 [U] ❌ 4N0T_A:219 no longer at interface
A:249 [HIS] B:41 [A] A:50 [LYS] X:9 [G] ❌ 4N0T_A:249 no longer at interface
A:249 [HIS] B:42 [A] A:50 [LYS] X:10 [C] ❌ 4N0T_A:249 no longer at interface
A:280 [ARG] B:40 [A] A:80 [LYS] X:8 [U] ❌ 4N0T_A:280 no longer at interface
A:285 [SER] B:42 [A] A:85 [GLN] X:10 [C] ❌ 4N0T_A:285 no longer at interface
A:286 [LEU] B:42 [A] A:86 [TYR] X:10 [C] ❌ 4N0T_A:286 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.65 3.87 0.00 0.71 0.28 0.56 0.6 0.59 0.61 0.10 0.56


Other pairs involving 4N0T_A_B or 6SQN_A_X

Total number of entries: 20

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
1DRZ_A_B 6SQN_A_X 0.95 0.96 0.29 0.89 RNA-binding domain, RBD compare
1G2E_A_B 6SQN_A_X 0.55 0.64 3.14 0.1 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
2NZ4_A_P 6SQN_A_X 0.96 0.93 0.39 0.8 RNA-binding domain, RBD compare
3MXH_P_R 6SQN_A_X 0.91 0.88 0.96 0.7 RNA-binding domain, RBD compare
4ED5_A_D 6SQN_A_X 0.55 0.65 2.53 0.1 RNA-binding domain, RBD compare
4N0T_A_B 6SQN_A_X 0.59 0.65 3.87 0.0 RNA-binding domain, RBD compare
4N0T_A_B 6F4G_B_C 0.58 0.61 3.62 0.0 RNA-binding domain, RBD compare
4N0T_A_B 5TF6_A_B 0.98 0.95 0.87 0.96 RNA-binding domain, RBD U6 spliceosomal RNA compare
4N0T_A_B 6F4H_A_B 0.56 0.64 3.75 0.0 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PR6_A_B 6SQN_A_X 0.95 0.96 0.3 0.89 RNA-binding domain, RBD compare
5TF6_A_B 6SQN_A_X 0.56 0.63 2.54 0.1 RNA-binding domain, RBD compare
6DCL_A_D 6SQN_A_X 0.28 0.63 1.96 0.13 RNA-binding domain, RBD compare
6F4G_B_C 6SQN_A_X 0.91 0.87 0.39 0.6 RNA-binding domain, RBD compare
6F4H_A_B 6SQN_A_X 0.93 0.92 0.38 0.74 RNA-binding domain, RBD compare
6SQN_A_X 7DCO_R_G 0.73 0.72 2.65 0.17 compare
6SQN_A_X 7DCO_X_G 0.45 0.66 2.52 0.12 RNA-binding domain, RBD compare