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All interfaces > All interologs > Interface groups > group141 > 4PKD_B_V vs 6F4H_A_B

Interface analysis


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Common contacts -

4PKD_B
4PKD_V
6F4H_A
6F4H_B
Conserved?
B:19 [GLU] V:65 [A] A:16 [GLU] B:7 [A] ✔
B:19 [GLU] V:66 [U] A:16 [GLU] B:8 [U] ✔
B:19 [GLU] V:68 [G] A:16 [GLU] B:10 [G] ✔
B:91 [SER] V:70 [A] A:88 [SER] B:12 [A] ✔
B:91 [SER] V:71 [C] A:88 [SER] B:13 [C] ✔
B:87 [ALA] V:69 [C] A:84 [SER] B:11 [C] ✔
B:87 [ALA] V:70 [A] A:84 [SER] B:12 [A] ✔
B:22 [LYS] V:60 [G] A:19 [LYS] B:2 [G] ✔
B:53 [GLY] V:68 [G] A:50 [GLY] B:10 [G] ✔
B:56 [PHE] V:69 [C] A:53 [PHE] B:11 [C] ✔
B:56 [PHE] V:70 [A] A:53 [PHE] B:12 [A] ✔
B:15 [ASN] V:67 [U] A:12 [ASN] B:9 [U] ✔
B:15 [ASN] V:68 [G] A:12 [ASN] B:10 [G] ✔
B:17 [LEU] V:68 [G] A:14 [LEU] B:10 [G] ✔
B:11 [THR] V:70 [A] A:8 [THR] B:12 [A] ✔
B:54 [GLN] V:68 [G] A:51 [GLN] B:10 [G] ✔
B:54 [GLN] V:69 [C] A:51 [GLN] B:11 [C] ✔
B:51 [MET] V:68 [G] A:48 [MET] B:10 [G] ✔
B:51 [MET] V:69 [C] A:48 [MET] B:11 [C] ✔
B:51 [MET] V:70 [A] A:48 [MET] B:12 [A] ✔
B:92 [ASP] V:71 [C] A:89 [ASP] B:13 [C] ✔
B:92 [ASP] V:72 [U] A:89 [ASP] B:14 [C] ✔
B:47 [ARG] V:75 [G] A:44 [LYS] B:17 [G] ✔
B:50 [LYS] V:68 [G] A:47 [LYS] B:10 [G] ✔
B:50 [LYS] V:70 [A] A:47 [LYS] B:12 [A] ✔
B:88 [LYS] V:69 [C] A:85 [LYS] B:11 [C] ✔
B:49 [LEU] V:65 [A] A:46 [LEU] B:7 [A] ✔
B:49 [LEU] V:66 [U] A:46 [LEU] B:8 [U] ✔
B:49 [LEU] V:68 [G] A:46 [LEU] B:10 [G] ✔
B:49 [LEU] V:75 [G] A:46 [LEU] B:17 [G] ✔
B:48 [SER] V:74 [C] A:45 [THR] B:16 [C] ✔
B:48 [SER] V:75 [G] A:45 [THR] B:17 [G] ✔
B:85 [GLN] V:69 [C] A:82 [ALA] B:11 [C] ✔
B:80 [LYS] V:67 [U] A:77 [LYS] B:9 [U] ✔
B:46 [SER] V:73 [C] A:43 [LEU] B:15 [U] ✔
B:46 [SER] V:74 [C] A:43 [LEU] B:16 [C] ✔
B:44 [LEU] V:70 [A] A:41 [VAL] B:12 [A] ✔
B:89 [THR] V:69 [C] A:86 [SER] B:11 [C] ✔
B:89 [THR] V:70 [A] A:86 [SER] B:12 [A] ✔
B:89 [THR] V:71 [C] A:86 [SER] B:13 [C] ✔
B:13 [TYR] V:68 [G] A:10 [TYR] B:10 [G] ✔
B:13 [TYR] V:69 [C] A:10 [TYR] B:11 [C] ✔
B:90 [ASP] V:70 [A] A:87 [ASP] B:12 [A] ✔
B:90 [ASP] V:71 [C] A:87 [ASP] B:13 [C] ✔
B:86 [TYR] V:69 [C] A:83 [TYR] B:11 [C] ✔
B:16 [ASN] V:67 [U] A:13 [ASN] B:9 [U] ✔
B:16 [ASN] V:68 [G] A:13 [ASN] B:10 [G] ✔
B:52 [ARG] V:65 [A] A:49 [ARG] B:7 [A] ✔
B:52 [ARG] V:66 [U] A:49 [ARG] B:8 [U] ✔
B:52 [ARG] V:68 [G] A:49 [ARG] B:10 [G] ✔
B:52 [ARG] V:75 [G] A:49 [ARG] B:17 [G] ✔
B:19 [GLU] V:67 [U] A:16 [GLU] B:9 [U] ❌ 6F4H_A_B
B:47 [ARG] V:74 [C] A:44 [LYS] B:16 [C] ❌ 6F4H_A_B
B:50 [LYS] V:71 [C] A:47 [LYS] B:13 [C] ❌ 6F4H_A_B
B:44 [LEU] V:71 [C] A:41 [VAL] B:13 [C] ❌ 6F4H_A_B
B:46 [SER] V:70 [A] A:43 [LEU] B:12 [A] ❌ 4PKD_B_V
B:50 [LYS] V:69 [C] A:47 [LYS] B:11 [C] ❌ 4PKD_B_V
B:92 [ASP] V:70 [A] A:89 [ASP] B:12 [A] ❌ 4PKD_B_V
B:22 [LYS] V:59 [GTP] A:19 [LYS] B:1 [G] ❌ 6F4H_B:1 no longer at interface
B:47 [ARG] V:59 [GTP] A:44 [LYS] B:1 [G] ❌ 6F4H_B:1 no longer at interface
B:24 [ASP] V:59 [GTP] A:21 [GLU] B:1 [G] ❌ 6F4H_A:21, 6F4H_B:1 no longer at interface
B:23 [LYS] V:59 [GTP] A:20 [LYS] B:1 [G] ❌ 6F4H_A:20, 6F4H_B:1 no longer at interface
B:6 [THR] V:69 [C] A:3 [MET] B:11 [C] ❌ 4PKD_B:6 no longer at interface
B:58 [ILE] V:70 [A] A:55 [ILE] B:12 [A] ❌ 4PKD_B:58 no longer at interface
B:83 [ARG] V:67 [U] A:80 [GLN] B:9 [U] ❌ 4PKD_B:83 no longer at interface
B:93 [ILE] V:71 [C] A:90 [ILE] B:13 [C] ❌ 4PKD_B:93 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.94 0.45 0.65 0.98 0.34 0.87 1.0 0.88 0.90 0.89 0.53


Other pairs involving 4PKD_B_V or 6F4H_A_B

Total number of entries: 31

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
1DRZ_A_B 6F4H_A_B 0.94 0.95 0.38 0.68 RNA-binding domain, RBD compare
6F4G_B_C 6F4H_A_B 0.81 0.87 0.36 0.5 RNA-binding domain, RBD compare
4ED5_A_D 6F4H_A_B 0.56 0.65 2.49 0.1 RNA-binding domain, RBD compare
1G2E_A_B 6F4H_A_B 0.57 0.64 3.02 0.1 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
4PR6_A_B 6F4H_A_B 0.94 0.95 0.38 0.68 RNA-binding domain, RBD compare
3MXH_P_R 6F4H_A_B 0.95 0.91 0.91 0.59 RNA-binding domain, RBD compare
1A9N_B_Q 6F4H_A_B 0.81 0.85 0.49 0.5 RNA-binding domain, RBD compare
5TF6_A_B 6F4H_A_B 0.57 0.64 3.83 0.0 RNA-binding domain, RBD compare
1M5O_C_B 6F4H_A_B 0.95 0.95 0.48 0.7 RNA-binding domain, RBD compare
6DCL_A_D 6F4H_A_B 0.33 0.63 1.94 0.17 RNA-binding domain, RBD compare
4N0T_A_B 6F4H_A_B 0.56 0.64 3.75 0.0 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
2NZ4_A_P 6F4H_A_B 0.92 0.95 0.41 0.7 RNA-binding domain, RBD compare
1SJ3_P_R 6F4H_A_B 0.97 0.96 0.38 0.71 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
6F4H_A_B 6SQN_A_X 0.93 0.92 0.38 0.74 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_4_G 0.35 0.61 1.28 0.17 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_R_G 0.77 0.7 2.58 0.17 compare
6F4H_A_B 7DCO_X_G 0.43 0.65 2.51 0.12 RNA-binding domain, RBD compare