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All interfaces > All interologs > Interface groups > group141 > 4PKD_B_V vs 6SQN_A_X

Interface analysis


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Common contacts -

4PKD_B
4PKD_V
6SQN_A
6SQN_X
Conserved?
B:19 [GLU] V:65 [A] A:19 [GLU] X:6 [A] ✔
B:19 [GLU] V:66 [U] A:19 [GLU] X:7 [U] ✔
B:19 [GLU] V:67 [U] A:19 [GLU] X:8 [U] ✔
B:19 [GLU] V:68 [G] A:19 [GLU] X:9 [G] ✔
B:91 [SER] V:70 [A] A:91 [SER] X:11 [A] ✔
B:91 [SER] V:71 [C] A:91 [SER] X:12 [C] ✔
B:87 [ALA] V:69 [C] A:87 [ALA] X:10 [C] ✔
B:87 [ALA] V:70 [A] A:87 [ALA] X:11 [A] ✔
B:22 [LYS] V:60 [G] A:22 [LYS] X:1 [A] ✔
B:53 [GLY] V:68 [G] A:53 [GLY] X:9 [G] ✔
B:56 [PHE] V:69 [C] A:56 [TRP] X:10 [C] ✔
B:56 [PHE] V:70 [A] A:56 [TRP] X:11 [A] ✔
B:15 [ASN] V:67 [U] A:15 [ASN] X:8 [U] ✔
B:15 [ASN] V:68 [G] A:15 [ASN] X:9 [G] ✔
B:17 [LEU] V:68 [G] A:17 [LEU] X:9 [G] ✔
B:11 [THR] V:70 [A] A:11 [THR] X:11 [A] ✔
B:54 [GLN] V:68 [G] A:54 [GLN] X:9 [G] ✔
B:54 [GLN] V:69 [C] A:54 [GLN] X:10 [C] ✔
B:51 [MET] V:68 [G] A:51 [MET] X:9 [G] ✔
B:51 [MET] V:70 [A] A:51 [MET] X:11 [A] ✔
B:92 [ASP] V:71 [C] A:92 [ASP] X:12 [C] ✔
B:50 [LYS] V:68 [G] A:50 [LYS] X:9 [G] ✔
B:88 [LYS] V:69 [C] A:88 [LYS] X:10 [C] ✔
B:49 [LEU] V:65 [A] A:49 [LEU] X:6 [A] ✔
B:49 [LEU] V:66 [U] A:49 [LEU] X:7 [U] ✔
B:49 [LEU] V:68 [G] A:49 [LEU] X:9 [G] ✔
B:49 [LEU] V:75 [G] A:49 [LEU] X:16 [G] ✔
B:48 [SER] V:75 [G] A:48 [SER] X:16 [G] ✔
B:85 [GLN] V:69 [C] A:85 [GLN] X:10 [C] ✔
B:80 [LYS] V:67 [U] A:80 [LYS] X:8 [U] ✔
B:44 [LEU] V:70 [A] A:44 [LEU] X:11 [A] ✔
B:44 [LEU] V:71 [C] A:44 [LEU] X:12 [C] ✔
B:89 [THR] V:70 [A] A:89 [THR] X:11 [A] ✔
B:89 [THR] V:71 [C] A:89 [THR] X:12 [C] ✔
B:13 [TYR] V:68 [G] A:13 [TYR] X:9 [G] ✔
B:13 [TYR] V:69 [C] A:13 [TYR] X:10 [C] ✔
B:90 [ASP] V:70 [A] A:90 [ASP] X:11 [A] ✔
B:90 [ASP] V:71 [C] A:90 [ASP] X:12 [C] ✔
B:86 [TYR] V:69 [C] A:86 [TYR] X:10 [C] ✔
B:16 [ASN] V:67 [U] A:16 [ASN] X:8 [U] ✔
B:16 [ASN] V:68 [G] A:16 [ASN] X:9 [G] ✔
B:52 [ARG] V:65 [A] A:52 [ARG] X:6 [A] ✔
B:52 [ARG] V:66 [U] A:52 [ARG] X:7 [U] ✔
B:52 [ARG] V:68 [G] A:52 [ARG] X:9 [G] ✔
B:52 [ARG] V:75 [G] A:52 [ARG] X:16 [G] ✔
B:51 [MET] V:69 [C] A:51 [MET] X:10 [C] ❌ 6SQN_A_X
B:50 [LYS] V:70 [A] A:50 [LYS] X:11 [A] ❌ 6SQN_A_X
B:50 [LYS] V:71 [C] A:50 [LYS] X:12 [C] ❌ 6SQN_A_X
B:89 [THR] V:69 [C] A:89 [THR] X:10 [C] ❌ 6SQN_A_X
B:50 [LYS] V:69 [C] A:50 [LYS] X:10 [C] ❌ 4PKD_B_V
B:22 [LYS] V:61 [A] A:22 [LYS] X:2 [A] ❌ 4PKD_V:61 no longer at interface
B:47 [ARG] V:75 [G] A:47 [ARG] X:16 [G] ❌ 6SQN_A:47 no longer at interface
B:93 [ILE] V:71 [C] A:93 [ILE] X:12 [C] ❌ 4PKD_B:93 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.94 0.34 0.80 0.95 0.49 0.93 0.9 0.96 0.96 0.75 0.38


Other pairs involving 4PKD_B_V or 6SQN_A_X

Total number of entries: 27

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
1A9N_B_Q 4PKD_B_V 0.75 0.85 0.6 0.5 RNA-binding domain, RBD compare
1DRZ_A_B 6SQN_A_X 0.95 0.96 0.29 0.89 RNA-binding domain, RBD compare
1DRZ_A_B 4PKD_B_V 0.93 0.66 0.31 0.71 RNA-binding domain, RBD compare
1G2E_A_B 6SQN_A_X 0.55 0.64 3.14 0.1 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
1M5O_C_B 4PKD_B_V 0.89 0.65 0.3 0.79 RNA-binding domain, RBD compare
1SJ3_P_R 4PKD_B_V 0.95 0.66 0.28 0.82 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
2NZ4_A_P 4PKD_B_V 0.94 0.52 0.55 0.69 RNA-binding domain, RBD compare
2NZ4_A_P 6SQN_A_X 0.96 0.93 0.39 0.8 RNA-binding domain, RBD compare
3MXH_P_R 6SQN_A_X 0.91 0.88 0.96 0.7 RNA-binding domain, RBD compare
3MXH_P_R 4PKD_B_V 0.84 0.6 0.68 0.69 RNA-binding domain, RBD compare
4ED5_A_D 6SQN_A_X 0.55 0.65 2.53 0.1 RNA-binding domain, RBD compare
4N0T_A_B 6SQN_A_X 0.59 0.65 3.87 0.0 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 6F4H_A_B 0.88 0.94 0.45 0.65 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PKD_B_V 6F4G_B_C 0.81 0.81 0.46 0.5 RNA-binding domain, RBD compare
4PR6_A_B 6SQN_A_X 0.95 0.96 0.3 0.89 RNA-binding domain, RBD compare
5TF6_A_B 6SQN_A_X 0.56 0.63 2.54 0.1 RNA-binding domain, RBD compare
6DCL_A_D 6SQN_A_X 0.28 0.63 1.96 0.13 RNA-binding domain, RBD compare
6F4G_B_C 6SQN_A_X 0.91 0.87 0.39 0.6 RNA-binding domain, RBD compare
6F4H_A_B 6SQN_A_X 0.93 0.92 0.38 0.74 RNA-binding domain, RBD compare
6SQN_A_X 7DCO_R_G 0.73 0.72 2.65 0.17 compare
6SQN_A_X 7DCO_X_G 0.45 0.66 2.52 0.12 RNA-binding domain, RBD compare