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All interfaces > All interologs > Interface groups > group141 > 4PR6_A_B vs 5DDP_D_A

Interface analysis


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Common contacts -

4PR6_A
4PR6_B
5DDP_D
5DDP_A
Conserved?
A:19 [GLU] B:148 [A] D:18 [GLU] A:35 [A] ✔
A:19 [GLU] B:149 [U] D:18 [GLU] A:36 [U] ✔
A:19 [GLU] B:150 [U] D:18 [GLU] A:37 [U] ✔
A:19 [GLU] B:151 [G] D:18 [GLU] A:38 [G] ✔
A:13 [TYR] B:151 [G] D:12 [TYR] A:38 [G] ✔
A:13 [TYR] B:152 [C] D:12 [TYR] A:39 [C] ✔
A:91 [SER] B:153 [A] D:90 [SER] A:40 [A] ✔
A:91 [SER] B:154 [C] D:90 [SER] A:41 [C] ✔
A:51 [MSE] B:151 [G] D:50 [MET] A:38 [G] ✔
A:51 [MSE] B:152 [C] D:50 [MET] A:39 [C] ✔
A:51 [MSE] B:153 [A] D:50 [MET] A:40 [A] ✔
A:15 [ASN] B:150 [U] D:14 [ASN] A:37 [U] ✔
A:15 [ASN] B:151 [G] D:14 [ASN] A:38 [G] ✔
A:90 [ASP] B:153 [A] D:89 [ASP] A:40 [A] ✔
A:90 [ASP] B:154 [C] D:89 [ASP] A:41 [C] ✔
A:87 [ALA] B:152 [C] D:86 [ALA] A:39 [C] ✔
A:87 [ALA] B:153 [A] D:86 [ALA] A:40 [A] ✔
A:17 [LEU] B:151 [G] D:16 [LEU] A:38 [G] ✔
A:11 [THR] B:153 [A] D:10 [THR] A:40 [A] ✔
A:88 [LYS] B:152 [C] D:87 [LYS] A:39 [C] ✔
A:49 [LEU] B:148 [A] D:48 [LEU] A:35 [A] ✔
A:49 [LEU] B:149 [U] D:48 [LEU] A:36 [U] ✔
A:49 [LEU] B:151 [G] D:48 [LEU] A:38 [G] ✔
A:49 [LEU] B:157 [C] D:48 [LEU] A:44 [C] ✔
A:49 [LEU] B:158 [G] D:48 [LEU] A:45 [G] ✔
A:22 [LYS] B:143 [A] D:21 [LYS] A:30 [G] ✔
A:22 [LYS] B:144 [C] D:21 [LYS] A:31 [G] ✔
A:53 [GLY] B:151 [G] D:52 [GLY] A:38 [G] ✔
A:54 [GLN] B:151 [G] D:53 [GLN] A:38 [G] ✔
A:54 [GLN] B:152 [C] D:53 [GLN] A:39 [C] ✔
A:48 [SER] B:157 [C] D:47 [SER] A:44 [C] ✔
A:48 [SER] B:158 [G] D:47 [SER] A:45 [G] ✔
A:86 [TYR] B:152 [C] D:85 [TYR] A:39 [C] ✔
A:85 [GLN] B:152 [C] D:84 [GLN] A:39 [C] ✔
A:80 [LYS] B:150 [U] D:79 [LYS] A:37 [U] ✔
A:46 [SER] B:157 [C] D:45 [SER] A:44 [C] ✔
A:16 [ASN] B:150 [U] D:15 [ASN] A:37 [U] ✔
A:16 [ASN] B:151 [G] D:15 [ASN] A:38 [G] ✔
A:44 [LEU] B:153 [A] D:43 [LEU] A:40 [A] ✔
A:56 [PHE] B:152 [C] D:55 [PHE] A:39 [C] ✔
A:56 [PHE] B:153 [A] D:55 [PHE] A:40 [A] ✔
A:92 [ASP] B:154 [C] D:91 [ASP] A:41 [C] ✔
A:52 [ARG] B:148 [A] D:51 [ARG] A:35 [A] ✔
A:52 [ARG] B:149 [U] D:51 [ARG] A:36 [U] ✔
A:52 [ARG] B:151 [G] D:51 [ARG] A:38 [G] ✔
A:52 [ARG] B:158 [G] D:51 [ARG] A:45 [G] ✔
A:89 [THR] B:152 [C] D:88 [THR] A:39 [C] ✔
A:89 [THR] B:153 [A] D:88 [THR] A:40 [A] ✔
A:89 [THR] B:154 [C] D:88 [THR] A:41 [C] ✔
A:47 [ARG] B:143 [A] D:46 [ARG] A:30 [G] ✔
A:47 [ARG] B:144 [C] D:46 [ARG] A:31 [G] ✔
A:47 [ARG] B:157 [C] D:46 [ARG] A:44 [C] ✔
A:93 [ILE] B:154 [C] D:92 [ILE] A:41 [C] ✔
A:50 [LYS] B:151 [G] D:49 [LYS] A:38 [G] ✔
A:20 [LYS] B:144 [C] D:19 [LYS] A:31 [G] ❌ 4PR6_A_B
A:44 [LEU] B:154 [C] D:43 [LEU] A:41 [C] ❌ 4PR6_A_B
A:47 [ARG] B:158 [G] D:46 [ARG] A:45 [G] ❌ 4PR6_A_B
A:50 [LYS] B:158 [G] D:49 [LYS] A:45 [G] ❌ 4PR6_A_B
A:50 [LYS] B:152 [C] D:49 [LYS] A:39 [C] ❌ 4PR6_A_B
A:50 [LYS] B:153 [A] D:49 [LYS] A:40 [A] ❌ 4PR6_A_B
A:20 [LYS] B:146 [C] D:19 [LYS] A:33 [C] ❌ 5DDP_A:33 no longer at interface
A:52 [ARG] B:147 [C] D:51 [ARG] A:34 [C] ❌ 5DDP_A:34 no longer at interface
A:22 [LYS] B:142 [A] D:21 [LYS] A:29 [A] ❌ 4PR6_B:142 no longer at interface
A:47 [ARG] B:142 [A] D:46 [ARG] A:29 [A] ❌ 4PR6_B:142 no longer at interface
A:92 [ASP] B:155 [U] D:91 [ASP] A:42 [U] ❌ 4PR6_B:155 no longer at interface
A:6 [THR] B:152 [C] D:5 [THR] A:39 [C] ❌ 5DDP_D:5 no longer at interface
A:58 [ILE] B:153 [A] D:57 [ILE] A:40 [A] ❌ 5DDP_D:57 no longer at interface
A:83 [ARG] B:150 [U] D:82 [ARG] A:37 [U] ❌ 5DDP_D:82 no longer at interface
A:23 [LYS] B:143 [A] D:22 [LYS] A:30 [G] ❌ 4PR6_A:23 no longer at interface
A:5 [GLU] B:152 [C] D:4 [GLU] A:39 [C] ❌ 4PR6_A:5 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.72 0.39 0.69 0.97 0.28 0.94 0.85 0.93 0.95 0.83 0.62


Other pairs involving 4PR6_A_B or 5DDP_D_A

Total number of entries: 24

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 4PR6_A_B 0.81 0.85 0.49 0.54 RNA-binding domain, RBD compare
1A9N_B_Q 5DDP_D_A 0.81 0.82 0.42 0.46 RNA-binding domain, RBD compare
1DRZ_A_B 4PR6_A_B 0.99 1.0 0.09 0.92 RNA-binding domain, RBD compare
1DRZ_A_B 5DDP_D_A 0.93 0.72 0.43 0.69 RNA-binding domain, RBD compare
1M5O_C_B 4PR6_A_B 0.97 0.69 0.39 0.85 RNA-binding domain, RBD compare
1M5O_C_B 5DDP_D_A 0.95 0.72 0.25 0.77 RNA-binding domain, RBD compare
1SJ3_P_R 5DDP_D_A 0.97 0.72 0.57 0.82 RNA-binding domain, RBD compare
1SJ3_P_R 4PR6_A_B 0.97 0.95 0.29 0.97 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 4PR6_A_B 0.93 0.94 0.27 0.83 RNA-binding domain, RBD compare
2NZ4_A_P 5DDP_D_A 0.96 0.73 0.46 0.85 RNA-binding domain, RBD compare
2NZ4_A_P 4PR6_A_B 0.96 0.66 0.34 0.85 RNA-binding domain, RBD compare
3MXH_P_R 5DDP_D_A 0.95 0.68 0.89 0.69 RNA-binding domain, RBD compare
3MXH_P_R 4PR6_A_B 0.93 0.65 0.96 0.78 RNA-binding domain, RBD compare
4PKD_B_V 4PR6_A_B 0.94 0.66 0.3 0.69 RNA-binding domain, RBD compare
4PKD_B_V 5DDP_D_A 0.98 0.71 0.29 0.85 RNA-binding domain, RBD compare
4PR6_A_B 5DDP_D_A 0.93 0.72 0.39 0.69 RNA-binding domain, RBD compare
4PR6_A_B 6F4H_A_B 0.94 0.95 0.38 0.68 RNA-binding domain, RBD compare
4PR6_A_B 6F4G_B_C 0.80 0.83 0.4 0.46 RNA-binding domain, RBD compare
4PR6_A_B 7DCO_R_G 0.75 0.51 2.49 0.17 compare
4PR6_A_B 6SQN_A_X 0.95 0.96 0.3 0.89 RNA-binding domain, RBD compare
5DDP_D_A 7DCO_R_G 0.74 0.54 2.57 0.21 compare
5DDP_D_A 6F4G_B_C 0.82 0.81 0.36 0.46 RNA-binding domain, RBD compare
5DDP_D_A 6F4H_A_B 0.92 0.96 0.33 0.68 RNA-binding domain, RBD compare