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All interfaces > All interologs > Interface groups > group141 > 6CMN_A_D

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6CMN_A
6CMN_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:6 [THR] D:35 [A] 4.01 44.08
A:13 [TYR] D:35 [A] 2.84 base/AA stacks 77.75
A:15 [ASN] D:35 [A] 3.57 60.69
A:19 [SER] D:24 [C] 4.79 42.89
A:20 [LYS] D:24 [C] 3.26 base:BB 52.6
A:22 [LYS] D:25 [U] 2.98 base:SC 57.95
A:23 [LYS] D:22 [A] 3.13 D:40 [U] 45.78
A:23 [LYS] D:23 [U] 4.61 45.78
A:47 [ARG] D:22 [A] 3.24 D:40 [U] base/AA stacks 42.75
A:47 [ARG] D:23 [U] 2.85 base/AA stacks 42.75
A:47 [ARG] D:26 [G] 2.71 D:39 [C] base:SC, base:SC 42.75
A:47 [ARG] D:39 [C] 4.59 D:26 [G] 42.75
A:48 [GLN] D:23 [U] 3.33 64.91
A:48 [GLN] D:35 [A] 4.71 64.91
A:48 [GLN] D:36 [G] 2.72 D:29 [C] 64.91
A:49 [ARG] D:23 [U] 3.32 base/AA stacks 42.3
A:49 [ARG] D:27 [A] 3.41 D:38 [U] base/AA stacks 42.3
A:49 [ARG] D:28 [G] 2.72 D:37 [C] base:SC 42.3
A:49 [ARG] D:29 [C] 3.62 D:36 [G] 42.3
A:49 [ARG] D:36 [G] 4.18 D:29 [C] 42.3
A:49 [ARG] D:37 [C] 3.91 D:28 [G] 42.3
A:50 [THR] D:34 [G] 4.58 D:30 [C] 43.99
A:51 [PRO] D:24 [C] 3.62 54.96
A:52 [ARG] D:29 [C] 4.71 D:36 [G] 81.6
A:52 [ARG] D:34 [G] 3.36 D:30 [C] base/AA stacks 81.6
A:52 [ARG] D:36 [G] 2.9 D:29 [C] base:SC, base:SC 81.6
A:54 [GLN] D:34 [G] 3.2 D:30 [C] sugar:SC 89.36
A:54 [GLN] D:35 [A] 3.22 89.36
A:54 [GLN] D:36 [G] 4.23 D:29 [C] 89.36
A:56 [PHE] D:35 [A] 3.67 85.87
A:85 [GLN] D:35 [A] 3.16 base:SC, base:SC 40.13
A:86 [TYR] D:35 [A] 3.0 base:BB 52.03
A:87 [ALA] D:35 [A] 3.44 93.17
A:88 [LYS] D:35 [A] 2.88 base:BB 64.33

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 6CMN_A_D A: Tar-binding protein 6.7, Oryctolagus cuniculus (genetically engineered) D: Trans-activation response RNA element, Human immunodeficiency virus 1 (synthetic) G1TM83 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6CMN_A_D 6XH3_A_D 0.80 0.97 1.27 0.84 RNA-binding domain, RBD compare
6CMN_A_D 6XH2_A_D 0.99 0.99 0.17 0.95 RNA-binding domain, RBD compare
6CMN_A_D 7DCO_X_G 0.53 0.62 1.23 0.0 RNA-binding domain, RBD compare
6CMN_A_D 6DCL_A_D 0.48 0.61 1.72 0.16 RNA-binding domain, RBD compare
6CMN_A_D 7DCO_4_G 0.65 0.58 1.84 0.12 RNA-binding domain, RBD compare