Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6DCL_A
|
6DCL_D
|
6XH2_A
|
6XH2_D
|
Conserved?
|
---|---|---|---|---|
A:146 [ARG] | D:8 [U] | A:52 [ARG] | D:34 [G] | ✔ |
A:146 [ARG] | D:10 [G] | A:52 [ARG] | D:36 [G] | ✔ |
A:178 [ARG] | D:9 [A] | A:85 [GLN] | D:35 [A] | ✔ |
A:180 [ALA] | D:9 [A] | A:87 [ALA] | D:35 [A] | ✔ |
A:181 [LEU] | D:9 [A] | A:88 [LYS] | D:35 [A] | ✔ |
A:108 [PHE] | D:9 [A] | A:13 [TYR] | D:35 [A] | ✔ |
A:150 [PHE] | D:9 [A] | A:56 [PHE] | D:35 [A] | ✔ |
A:148 [PHE] | D:8 [U] | A:54 [GLN] | D:34 [G] | ✔ |
A:148 [PHE] | D:9 [A] | A:54 [GLN] | D:35 [A] | ✔ |
A:148 [PHE] | D:10 [G] | A:54 [GLN] | D:36 [G] | ✔ |
A:179 [LYS] | D:9 [A] | A:86 [TYR] | D:35 [A] | ✔ |
A:146 [ARG] | D:9 [A] | A:52 [ARG] | D:35 [A] | ❌ 6XH2_A_D |
A:178 [ARG] | D:8 [U] | A:85 [GLN] | D:34 [G] | ❌ 6XH2_A_D |
A:110 [GLY] | D:8 [U] | A:15 [ASN] | D:34 [G] | ❌ 6XH2_A_D |
A:180 [ALA] | D:10 [G] | A:87 [ALA] | D:36 [G] | ❌ 6XH2_A_D |
A:181 [LEU] | D:10 [G] | A:88 [LYS] | D:36 [G] | ❌ 6XH2_A_D |
A:108 [PHE] | D:8 [U] | A:13 [TYR] | D:34 [G] | ❌ 6XH2_A_D |
A:182 [SER] | D:10 [G] | A:89 [THR] | D:36 [G] | ❌ 6XH2_A_D |
A:150 [PHE] | D:10 [G] | A:56 [PHE] | D:36 [G] | ❌ 6XH2_A_D |
A:110 [GLY] | D:9 [A] | A:15 [ASN] | D:35 [A] | ❌ 6DCL_A_D |
A:144 [LYS] | D:8 [U] | A:50 [THR] | D:34 [G] | ❌ 6DCL_A_D |
A:182 [SER] | D:9 [A] | A:89 [THR] | D:35 [A] | ❌ 6DCL_A_D |
A:176 [GLU] | D:8 [U] | A:83 [ALA] | D:34 [G] | ❌ 6XH2_A:83 no longer at interface |
A:137 [MET] | D:10 [G] | A:46 [PRO] | D:36 [G] | ❌ 6XH2_A:46 no longer at interface |
A:106 [LYS] | D:10 [G] | A:11 [THR] | D:36 [G] | ❌ 6XH2_A:11 no longer at interface |
A:135 [GLU] | D:10 [G] | A:44 [LEU] | D:36 [G] | ❌ 6XH2_A:44 no longer at interface |
A:112 [ILE] | D:8 [U] | A:17 [LEU] | D:34 [G] | ❌ 6XH2_A:17 no longer at interface |
A:111 [GLY] | D:8 [U] | A:16 [ASN] | D:34 [G] | ❌ 6XH2_A:16 no longer at interface |
A:147 [GLY] | D:8 [U] | A:53 [GLY] | D:34 [G] | ❌ 6XH2_A:53 no longer at interface |
A:139 [ASP] | D:10 [G] | A:48 [THR] | D:36 [G] | ❌ 6DCL_A:139 no longer at interface |
A:142 [SER] | D:10 [G] | A:49 [ARG] | D:36 [G] | ❌ 6DCL_A:142 no longer at interface |
A:99 [GLY] | D:9 [A] | A:6 [THR] | D:35 [A] | ❌ 6DCL_A:99 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
RNA-binding domain, RBD | 0.6 | 1.96 | 0.14 | 0.72 | 0.06 | 0.59 | 0.6 | 0.48 | 0.47 | 0.36 | 0.48 |
Other pairs involving 6DCL_A_D or 6XH2_A_D
Total number of entries: 10
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6XH2_A_D | 7DCO_X_G | 0.57 | 0.61 | 1.84 | 0.0 | RNA-binding domain, RBD | compare | |
6XH2_A_D | 6XH3_A_D | 0.81 | 0.98 | 1.26 | 0.89 | RNA-binding domain, RBD | compare | |
1URN_A_P | 6DCL_A_D | 0.33 | 0.61 | 1.95 | 0.17 | RNA-binding domain, RBD | compare | |
1A9N_B_Q | 6DCL_A_D | 0.32 | 0.6 | 2.71 | 0.2 | RNA-binding domain, RBD | compare | |
6CMN_A_D | 6XH2_A_D | 0.99 | 0.99 | 0.17 | 0.95 | RNA-binding domain, RBD | compare | |
6CMN_A_D | 6DCL_A_D | 0.48 | 0.61 | 1.72 | 0.16 | RNA-binding domain, RBD | compare | |
6DCL_A_D | 6F4H_A_B | 0.33 | 0.63 | 1.94 | 0.17 | RNA-binding domain, RBD | compare | |
6DCL_A_D | 6SQN_A_X | 0.28 | 0.63 | 1.96 | 0.13 | RNA-binding domain, RBD | compare | |
6DCL_A_D | 6XH2_A_D | 0.48 | 0.6 | 1.96 | 0.14 | RNA-binding domain, RBD | compare | |
6DCL_A_D | 6F4G_B_C | 0.32 | 0.61 | 2.78 | 0.26 | RNA-binding domain, RBD | compare |