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All interfaces > All interologs > Interface groups > group141 > 6SQN_A_X

Interface analysis

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Licorice
Surface

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6SQN_A
6SQN_X
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:5 [GLU] X:10 [C] 3.65 12.33
A:11 [THR] X:11 [A] 4.41 88.03
A:13 [TYR] X:9 [G] 3.35 87.11
A:13 [TYR] X:10 [C] 3.54 base/AA stacks 87.11
A:15 [ASN] X:8 [U] 3.65 59.18
A:15 [ASN] X:9 [G] 3.07 base:SC 59.18
A:16 [ASN] X:8 [U] 2.83 base:SC 98.27
A:16 [ASN] X:9 [G] 3.06 base:BB 98.27
A:17 [LEU] X:9 [G] 4.31 85.38
A:19 [GLU] X:6 [A] 4.14 65.22
A:19 [GLU] X:7 [U] 2.79 base:SC 65.22
A:19 [GLU] X:8 [U] 4.91 65.22
A:19 [GLU] X:9 [G] 2.7 base:SC 65.22
A:22 [LYS] X:1 [A] 4.14 49.65
A:22 [LYS] X:2 [A] 2.94 X:19 [U] 49.65
A:44 [LEU] X:11 [A] 3.71 33.49
A:44 [LEU] X:12 [C] 3.93 33.49
A:48 [SER] X:16 [G] 3.83 X:5 [C] 68.28
A:49 [LEU] X:6 [A] 3.59 48.32
A:49 [LEU] X:7 [U] 4.02 48.32
A:49 [LEU] X:9 [G] 4.58 48.32
A:49 [LEU] X:16 [G] 3.61 X:5 [C] 48.32
A:50 [LYS] X:9 [G] 2.54 sugar:BB 53.74
A:50 [LYS] X:10 [C] 4.87 53.74
A:51 [MET] X:9 [G] 4.76 54.4
A:51 [MET] X:11 [A] 2.97 54.4
A:52 [ARG] X:6 [A] 3.04 base:SC 84.12
A:52 [ARG] X:7 [U] 3.58 84.12
A:52 [ARG] X:9 [G] 3.1 84.12
A:52 [ARG] X:16 [G] 2.98 X:5 [C] base:SC, base:SC 84.12
A:53 [GLY] X:9 [G] 3.55 94.07
A:54 [GLN] X:9 [G] 3.06 base/AA stacks 90.45
A:54 [GLN] X:10 [C] 3.7 90.45
A:56 [TRP] X:10 [C] 3.12 base:SC 82.52
A:56 [TRP] X:11 [A] 3.37 base/AA stacks 82.52
A:80 [LYS] X:8 [U] 2.83 base:SC 69.55
A:85 [GLN] X:10 [C] 2.97 base:SC 38.54
A:86 [TYR] X:10 [C] 2.95 base:BB 52.74
A:87 [ALA] X:10 [C] 3.5 94.83
A:87 [ALA] X:11 [A] 4.03 94.83
A:88 [LYS] X:10 [C] 3.17 base:BB 55.1
A:89 [THR] X:11 [A] 2.85 base:BB 48.51
A:89 [THR] X:12 [C] 3.81 base:SC 48.51
A:90 [ASP] X:11 [A] 3.65 33.73
A:90 [ASP] X:12 [C] 3.01 base:BB 33.73
A:91 [SER] X:11 [A] 2.71 base:SC 85.38
A:91 [SER] X:12 [C] 3.33 85.38
A:92 [ASP] X:12 [C] 3.06 base:BB base/AA stacks 60.43
A:93 [ILE] X:12 [C] 4.83 31.73

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 6SQN_A_X A: U1 small nuclear ribonucleoprotein a, Homo sapiens (genetically engineered) X: RNA hairpin, Homo sapiens (genetically engineered) P09012 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 16

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 6SQN_A_X 0.92 0.87 0.86 0.6 RNA-binding domain, RBD compare
1DRZ_A_B 6SQN_A_X 0.95 0.96 0.29 0.89 RNA-binding domain, RBD compare
1G2E_A_B 6SQN_A_X 0.55 0.64 3.14 0.1 RNA-binding domain, RBD compare
1M5O_C_B 6SQN_A_X 0.99 0.95 0.55 0.93 RNA-binding domain, RBD compare
2NZ4_A_P 6SQN_A_X 0.96 0.93 0.39 0.8 RNA-binding domain, RBD compare
3MXH_P_R 6SQN_A_X 0.91 0.88 0.96 0.7 RNA-binding domain, RBD compare
4ED5_A_D 6SQN_A_X 0.55 0.65 2.53 0.1 RNA-binding domain, RBD compare
4N0T_A_B 6SQN_A_X 0.59 0.65 3.87 0.0 RNA-binding domain, RBD compare
4PKD_B_V 6SQN_A_X 0.96 0.94 0.34 0.8 RNA-binding domain, RBD compare
4PR6_A_B 6SQN_A_X 0.95 0.96 0.3 0.89 RNA-binding domain, RBD compare
5TF6_A_B 6SQN_A_X 0.56 0.63 2.54 0.1 RNA-binding domain, RBD compare
6DCL_A_D 6SQN_A_X 0.28 0.63 1.96 0.13 RNA-binding domain, RBD compare
6F4G_B_C 6SQN_A_X 0.91 0.87 0.39 0.6 RNA-binding domain, RBD compare
6F4H_A_B 6SQN_A_X 0.93 0.92 0.38 0.74 RNA-binding domain, RBD compare
6SQN_A_X 7DCO_R_G 0.73 0.72 2.65 0.17 compare
6SQN_A_X 7DCO_X_G 0.45 0.66 2.52 0.12 RNA-binding domain, RBD compare