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All interfaces > All interologs > Interface groups > group141 > 7DCO_X_G

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7DCO_X
7DCO_G
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
X:6 [GLN] G:514 [U] 4.75 43.13
X:34 [TYR] G:520 [G] 3.29 base/AA stacks 67.33
X:37 [ASN] G:517 [U] 3.52 91.5
X:40 [ARG] G:519 [U] 4.2 0.1
X:72 [GLN] G:519 [U] 4.89 78.35
X:74 [PHE] G:519 [U] 3.97 70.88
X:74 [PHE] G:520 [G] 3.3 70.88
X:74 [PHE] G:521 [U] 3.89 70.88
X:76 [TYR] G:520 [G] 4.01 71.62
X:76 [TYR] G:521 [U] 3.12 sugar:SC base/AA stacks 71.62
X:100 [ARG] G:517 [U] 3.95 base/AA stacks 84.85
X:105 [ASP] G:520 [G] 3.28 base:SC 52.8
X:106 [HIS] G:520 [G] 4.26 28.12
X:107 [THR] G:520 [G] 2.57 base:SC 74.25
X:107 [THR] G:521 [U] 4.39 74.25
X:108 [PHE] G:520 [G] 4.99 10.23
X:108 [PHE] G:521 [U] 3.37 base:BB 10.23
X:109 [TYR] G:521 [U] 3.54 27.78
X:110 [ARG] G:521 [U] 3.11 base:BB, sugar:BB 56.94
X:110 [ARG] G:522 [U] 3.35 base/AA stacks 56.94
X:111 [PRO] G:522 [U] 4.79 52.79
X:112 [LYS] G:521 [U] 3.31 51.04
X:112 [LYS] G:522 [U] 3.39 51.04

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 7DCO_X_G X: Sx2_g0027210.mRNA.1.cds.1, Saccharomyces cerevisiae (natural) G: Pre-mRNA, Saccharomyces cerevisiae (natural) RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6XH2_A_D 7DCO_X_G 0.57 0.61 1.84 0.0 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_X_G 0.33 0.62 3.54 0.12 RNA-binding domain, RBD compare
1URN_A_P 7DCO_X_G 0.42 0.64 2.53 0.12 RNA-binding domain, RBD compare
6XH3_A_D 7DCO_X_G 0.50 0.63 1.21 0.0 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_X_G 0.31 0.63 3.58 0.12 RNA-binding domain, RBD compare
6SQN_A_X 7DCO_X_G 0.45 0.66 2.52 0.12 RNA-binding domain, RBD compare
6CMN_A_D 7DCO_X_G 0.53 0.62 1.23 0.0 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_X_G 0.43 0.65 2.51 0.12 RNA-binding domain, RBD compare