Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6S0X_u
|
6S0X_a
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| u:27 [GLY] | a:726 [A] | 3.83 | 83.43 | |||
| u:31 [GLU] | a:726 [A] | 2.91 | sugar:SC, sugar:SC | 57.24 | ||
| u:34 [LYS] | a:726 [A] | 3.03 | sugar:SC | 31.74 | ||
| u:34 [LYS] | a:727 [C] | 4.64 | 31.74 | |||
| u:35 [ARG] | a:726 [A] | 3.71 | sugar:SC | 71.61 | ||
| u:38 [TYR] | a:1536 [G] | 4.21 | a:1521 [C] | 53.44 | ||
| u:40 [LYS] | a:1535 [C] | 3.99 | a:1522 [G] | 94.33 | ||
| u:40 [LYS] | a:1536 [G] | 3.3 | a:1521 [C] | 94.33 | ||
| u:40 [LYS] | a:1537 [G] | 4.3 | a:1520 [C] | 94.33 | ||
| u:41 [PRO] | a:1537 [G] | 3.58 | a:1520 [C] | 76.43 | ||
| u:42 [SER] | a:1537 [G] | 3.25 | a:1520 [C] | 97.71 | ||
| u:42 [SER] | a:1538 [C] | 2.58 | a:1519 [G] | 97.71 | ||
| u:46 [LYS] | a:1541 [G] | 4.31 | 76.74 | |||
| u:48 [LYS] | a:729 [A] | 4.62 | 74.42 | |||
| u:48 [LYS] | a:730 [G] | 3.34 | a:741 [G] | 74.42 | ||
| u:48 [LYS] | a:731 [U] | 2.92 | 74.42 | |||
| u:49 [SER] | a:731 [U] | 3.76 | 14.46 | |||
| u:50 [GLU] | a:1543 [U] | 4.13 | 32.22 | |||
| u:52 [ALA] | a:730 [G] | 3.98 | a:741 [G] | 86.9 | ||
| u:52 [ALA] | a:731 [U] | 4.67 | 86.9 | |||
| u:53 [ARG] | a:731 [U] | 3.32 | 30.9 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group27 | 6S0X_u_a | u: 30s ribosomal protein s21, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) | 30S ribosomal protein S21 | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6S0X_u_a | 7K00_U_A | 0.61 | 0.94 | 2.04 | 0.43 | 30S ribosomal protein S21 | Bacterial small subunit ribosomal RNA | compare |