RNAprotDB

All interfaces > All interologs > Interface groups > group27 > 6S0X_u_a vs 7K00_U_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6S0X_u
6S0X_a
7K00_U
7K00_A
Conserved?
u:53 [ARG] a:731 [U] U:52 [ALA] A:723 [U] ✔
u:46 [LYS] a:1541 [G] U:46 [LYS] A:1530 [G] ✔
u:49 [SER] a:731 [U] U:49 [LYS] A:723 [U] ✔
u:31 [GLU] a:726 [A] U:31 [GLU] A:718 [A] ✔
u:42 [SER] a:1537 [G] U:42 [THR] A:1526 [G] ✔
u:42 [SER] a:1538 [C] U:42 [THR] A:1527 [U] ✔
u:40 [LYS] a:1536 [G] U:40 [LYS] A:1525 [G] ✔
u:40 [LYS] a:1537 [G] U:40 [LYS] A:1526 [G] ✔
u:48 [LYS] a:731 [U] U:48 [ALA] A:723 [U] ✔
u:41 [PRO] a:1537 [G] U:41 [PRO] A:1526 [G] ✔
u:34 [LYS] a:726 [A] U:34 [ARG] A:718 [A] ✔
u:34 [LYS] a:727 [C] U:34 [ARG] A:719 [C] ✔
u:38 [TYR] a:1536 [G] U:38 [TYR] A:1525 [G] ✔
u:35 [ARG] a:726 [A] U:35 [ARG] A:718 [A] ✔
u:40 [LYS] a:1538 [C] U:40 [LYS] A:1527 [U] ❌ 6S0X_u_a
u:41 [PRO] a:1536 [G] U:41 [PRO] A:1525 [G] ❌ 6S0X_u_a
u:50 [GLU] a:1543 [U] U:50 [ALA] A:1532 [U] ❌ 7K00_U:50, 7K00_A:1532 no longer at interface
u:40 [LYS] a:1535 [C] U:40 [LYS] A:1524 [C] ❌ 7K00_A:1524 no longer at interface
u:48 [LYS] a:729 [A] U:48 [ALA] A:721 [G] ❌ 7K00_A:721 no longer at interface
u:48 [LYS] a:730 [G] U:48 [ALA] A:722 [G] ❌ 7K00_A:722 no longer at interface
u:42 [SER] a:1539 [U] U:42 [THR] A:1528 [U] ❌ 6S0X_a:1539 no longer at interface
u:46 [LYS] a:1539 [U] U:46 [LYS] A:1528 [U] ❌ 6S0X_a:1539 no longer at interface
u:46 [LYS] a:1518 [A] U:46 [LYS] A:1507 [A] ❌ 6S0X_a:1518 no longer at interface
u:27 [GLY] a:726 [A] U:27 [GLY] A:718 [A] ❌ 7K00_U:27 no longer at interface
u:45 [ARG] a:1538 [C] U:45 [ARG] A:1527 [U] ❌ 6S0X_u:45 no longer at interface
u:45 [ARG] a:1537 [G] U:45 [ARG] A:1526 [G] ❌ 6S0X_u:45 no longer at interface
u:54 [LYS] a:731 [U] U:53 [VAL] A:723 [U] ❌ 6S0X_u:54 no longer at interface
u:55 [ARG] a:731 [U] U:55 [ARG] A:723 [U] ❌ 6S0X_u:55 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
30S ribosomal protein S21 Bacterial small subunit ribosomal RNA 0.94 2.04 0.43 0.73 0.95 0.79 0.64 0.61 0.36 0.27 0.86


Other pairs involving 6S0X_u_a or 7K00_U_A

Total number of entries: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0X_u_a 7K00_U_A 0.61 0.94 2.04 0.43 30S ribosomal protein S21 Bacterial small subunit ribosomal RNA compare