RNAprotDB

All interfaces > All interologs > Interface groups > group55 > 1YHQ_1_0

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1YHQ_1
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1:1 [THR] 0:830 [G] 4.66 0:851 [C] 75.76
1:1 [THR] 0:831 [U] 4.62 75.76
1:1 [THR] 0:845 [U] 4.7 75.76
1:1 [THR] 0:1836 [A] 2.82 0:778 [C] sugar:BB 75.76
1:1 [THR] 0:1837 [G] 2.82 75.76
1:2 [GLY] 0:845 [U] 3.38 36.53
1:2 [GLY] 0:846 [A] 4.48 0:837 [U] 36.53
1:2 [GLY] 0:1836 [A] 3.48 0:778 [C] 36.53
1:2 [GLY] 0:1837 [G] 3.42 36.53
1:3 [ALA] 0:778 [C] 4.55 0:1836 [A] 55.27
1:3 [ALA] 0:882 [A] 3.58 55.27
1:3 [ALA] 0:883 [U] 4.14 55.27
1:3 [ALA] 0:1836 [A] 3.16 0:778 [C] sugar:BB 55.27
1:3 [ALA] 0:1837 [G] 3.01 base:BB 55.27
1:4 [GLY] 0:845 [U] 3.43 74.18
1:4 [GLY] 0:882 [A] 3.59 74.18
1:4 [GLY] 0:1837 [G] 3.35 74.18
1:5 [THR] 0:843 [A] 3.93 0:838 [C] 78.39
1:5 [THR] 0:844 [A] 4.39 78.39
1:5 [THR] 0:845 [U] 2.72 78.39
1:5 [THR] 0:882 [A] 3.77 base:SC 78.39
1:5 [THR] 0:1688 [G] 3.41 sugar:SC 78.39
1:5 [THR] 0:1694 [G] 3.11 0:1687 [C] base:BB 78.39
1:5 [THR] 0:1695 [G] 4.77 0:1686 [C] 78.39
1:6 [PRO] 0:845 [U] 4.05 10.5
1:6 [PRO] 0:846 [A] 3.73 0:837 [U] 10.5
1:6 [PRO] 0:1694 [G] 3.83 0:1687 [C] 10.5
1:6 [PRO] 0:1695 [G] 2.89 0:1686 [C] sugar:BB 10.5
1:7 [SER] 0:778 [C] 3.33 0:1836 [A] sugar:SC 69.54
1:7 [SER] 0:779 [U] 4.97 0:776 [A] 69.54
1:7 [SER] 0:1695 [G] 5.0 0:1686 [C] 69.54
1:7 [SER] 0:1836 [A] 3.22 0:778 [C] 69.54
1:8 [GLN] 0:882 [A] 4.88 2.99
1:8 [GLN] 0:1687 [C] 2.78 0:1694 [G] sugar:BB 2.99
1:8 [GLN] 0:1688 [G] 3.34 2.99
1:8 [GLN] 0:1694 [G] 4.32 0:1687 [C] 2.99
1:8 [GLN] 0:1695 [G] 4.96 0:1686 [C] 2.99
1:9 [GLY] 0:1686 [C] 4.98 0:1695 [G] 76.1
1:9 [GLY] 0:1687 [C] 3.01 0:1694 [G] base:BB 76.1
1:9 [GLY] 0:1694 [G] 3.54 0:1687 [C] 76.1
1:9 [GLY] 0:1695 [G] 3.1 0:1686 [C] base:BB 76.1
1:9 [GLY] 0:1696 [U] 3.59 0:1682 [A] 76.1
1:10 [LYS] 0:777 [U] 4.7 48.13
1:10 [LYS] 0:778 [C] 3.88 0:1836 [A] 48.13
1:10 [LYS] 0:779 [U] 2.87 0:776 [A] 48.13
1:10 [LYS] 0:861 [A] 4.5 0:785 [U] 48.13
1:10 [LYS] 0:1695 [G] 3.72 0:1686 [C] 48.13
1:10 [LYS] 0:1696 [U] 3.88 0:1682 [A] 48.13
1:11 [LYS] 0:777 [U] 3.06 36.48
1:11 [LYS] 0:778 [C] 3.56 0:1836 [A] 36.48
1:11 [LYS] 0:881 [C] 2.87 base:SC 36.48
1:11 [LYS] 0:1687 [C] 3.53 0:1694 [G] 36.48
1:12 [ASN] 0:777 [U] 3.3 35.87
1:12 [ASN] 0:862 [U] 3.86 0:784 [A] 35.87
1:12 [ASN] 0:1413 [A] 4.21 35.87
1:12 [ASN] 0:1414 [A] 2.61 0:1681 [G] base:SC, sugar:BB 35.87
1:12 [ASN] 0:1415 [G] 3.19 0:1680 [C] 35.87
1:12 [ASN] 0:1686 [C] 4.61 0:1695 [G] 35.87
1:12 [ASN] 0:1696 [U] 4.89 0:1682 [A] 35.87
1:13 [THR] 0:777 [U] 2.89 base:BB, base:BB 5.93
1:13 [THR] 0:863 [G] 4.32 0:783 [C] 5.93
1:13 [THR] 0:1414 [A] 4.72 0:1681 [G] 5.93
1:13 [THR] 0:1415 [G] 4.62 0:1680 [C] 5.93
1:14 [THR] 0:120 [A] 4.11 16.09
1:14 [THR] 0:1414 [A] 4.92 0:1681 [G] 16.09
1:14 [THR] 0:1415 [G] 2.81 0:1680 [C] 16.09
1:14 [THR] 0:1416 [G] 4.74 0:1679 [C] 16.09
1:15 [THR] 0:470 [U] 3.51 sugar:SC 50.24
1:15 [THR] 0:776 [A] 4.19 0:779 [U] 50.24
1:15 [THR] 0:777 [U] 3.19 50.24
1:16 [HIS] 0:470 [U] 2.65 91.54
1:16 [HIS] 0:471 [G] 3.13 91.54
1:16 [HIS] 0:774 [C] 4.54 0:887 [G] 91.54
1:16 [HIS] 0:775 [G] 2.8 91.54
1:17 [THR] 0:120 [A] 3.07 53.24
1:18 [LYS] 0:52 [A] 4.09 0:109 [U] 18.52
1:18 [LYS] 0:120 [A] 2.9 sugar:BB 18.52
1:18 [LYS] 0:121 [U] 3.04 18.52
1:19 [CYS] 0:51 [G] 4.88 0:110 [C] 81.89
1:19 [CYS] 0:120 [A] 4.44 81.89
1:19 [CYS] 0:121 [U] 3.23 81.89
1:20 [ARG] 0:50 [G] 4.52 0:111 [C] 76.84
1:20 [ARG] 0:51 [G] 4.96 0:110 [C] 76.84
1:20 [ARG] 0:111 [C] 2.72 0:50 [G] 76.84
1:20 [ARG] 0:112 [G] 2.56 0:49 [A] 76.84
1:20 [ARG] 0:119 [A] 3.33 base/AA stacks 76.84
1:20 [ARG] 0:120 [A] 3.36 76.84
1:20 [ARG] 0:121 [U] 3.38 76.84
1:21 [ARG] 0:50 [G] 3.04 0:111 [C] base:BB 86.31
1:21 [ARG] 0:51 [G] 4.31 0:110 [C] 86.31
1:21 [ARG] 0:111 [C] 4.1 0:50 [G] 86.31
1:21 [ARG] 0:112 [G] 3.57 0:49 [A] 86.31
1:21 [ARG] 0:113 [A] 2.88 0:47 [G] 86.31
1:22 [CYS] 0:51 [G] 3.47 0:110 [C] 89.43
1:23 [GLY] 0:51 [G] 3.29 0:110 [C] 96.6
1:23 [GLY] 0:52 [A] 4.45 0:109 [U] 96.6
1:23 [GLY] 0:121 [U] 3.71 96.6
1:25 [LYS] 0:470 [U] 3.67 59.41
1:25 [LYS] 0:471 [G] 2.78 59.41
1:26 [SER] 0:471 [G] 3.57 89.14
1:26 [SER] 0:472 [A] 2.71 0:469 [G] 89.14
1:27 [TYR] 0:120 [A] 2.98 51.77
1:28 [HIS] 0:775 [G] 3.97 92.69
1:28 [HIS] 0:776 [A] 2.87 0:779 [U] 92.69
1:29 [THR] 0:120 [A] 2.62 base:SC 0.0
1:30 [LYS] 0:862 [U] 4.85 0:784 [A] 57.36
1:30 [LYS] 0:863 [G] 2.59 0:783 [C] 57.36
1:30 [LYS] 0:864 [U] 2.93 0:782 [G] 57.36
1:31 [LYS] 0:775 [G] 3.92 61.53
1:31 [LYS] 0:776 [A] 2.68 0:779 [U] 61.53
1:32 [LYS] 0:119 [A] 4.5 51.53
1:32 [LYS] 0:120 [A] 2.51 51.53
1:34 [CYS] 0:774 [C] 4.98 0:887 [G] 99.0
1:35 [SER] 0:471 [G] 2.86 sugar:SC 76.77
1:35 [SER] 0:472 [A] 3.38 0:469 [G] 76.77
1:35 [SER] 0:774 [C] 3.24 0:887 [G] 76.77
1:35 [SER] 0:775 [G] 3.33 76.77
1:36 [SER] 0:472 [A] 3.53 0:469 [G] 70.18
1:36 [SER] 0:473 [A] 4.73 0:468 [U] 70.18
1:39 [PHE] 0:112 [G] 3.75 0:49 [A] 65.74
1:39 [PHE] 0:113 [A] 3.67 0:47 [G] 65.74
1:40 [GLY] 0:1463 [U] 4.63 0:1480 [A] 88.23
1:41 [LYS] 0:774 [C] 4.86 0:887 [G] 49.47
1:41 [LYS] 0:1473 [U] 3.26 base:SC 49.47
1:41 [LYS] 0:1474 [C] 3.7 0:1468 [G] 49.47
1:42 [SER] 0:1473 [U] 2.9 80.61
1:43 [ALA] 0:113 [A] 3.2 0:47 [G] 49.16
1:43 [ALA] 0:114 [A] 3.85 0:48 [A] 49.16
1:43 [ALA] 0:148 [A] 3.92 0:43 [U] 49.16
1:44 [LYS] 0:148 [A] 3.38 0:43 [U] 64.24
1:44 [LYS] 0:149 [G] 3.69 0:42 [C] 64.24
1:44 [LYS] 0:181 [G] 4.14 0:155 [C] 64.24
1:44 [LYS] 0:182 [G] 3.33 0:154 [C] 64.24
1:44 [LYS] 0:1473 [U] 4.04 64.24
1:45 [ARG] 0:49 [A] 3.86 0:112 [G] 30.51
1:45 [ARG] 0:50 [G] 3.91 0:111 [C] base:SC 30.51
1:45 [ARG] 0:112 [G] 4.24 0:49 [A] 30.51
1:45 [ARG] 0:148 [A] 3.96 0:43 [U] 30.51
1:45 [ARG] 0:149 [G] 2.77 0:42 [C] 30.51
1:45 [ARG] 0:1473 [U] 4.48 30.51
1:46 [ARG] 0:472 [A] 2.99 0:469 [G] sugar:SC 85.16
1:46 [ARG] 0:473 [A] 3.14 0:468 [U] 85.16
1:46 [ARG] 0:773 [A] 2.84 0:888 [U] sugar:SC 85.16
1:46 [ARG] 0:774 [C] 3.16 0:887 [G] 85.16
1:47 [ASP] 0:179 [C] 4.62 0:157 [G] 29.37
1:48 [TYR] 0:179 [C] 3.29 0:157 [G] 43.5
1:48 [TYR] 0:180 [G] 4.54 0:156 [C] 43.5
1:48 [TYR] 0:772 [G] 3.41 0:889 [C] 43.5
1:48 [TYR] 0:773 [A] 3.45 0:888 [U] 43.5
1:48 [TYR] 0:774 [C] 4.99 0:887 [G] 43.5
1:48 [TYR] 0:1473 [U] 4.64 43.5
1:49 [GLU] 0:178 [U] 3.58 0:158 [A] 49.35
1:49 [GLU] 0:179 [C] 2.58 0:157 [G] 49.35
1:50 [TRP] 0:178 [U] 3.71 0:158 [A] 55.13
1:50 [TRP] 0:179 [C] 4.29 0:157 [G] 55.13
1:50 [TRP] 0:472 [A] 3.92 0:469 [G] 55.13
1:50 [TRP] 0:473 [A] 4.25 0:468 [U] 55.13
1:50 [TRP] 0:771 [G] 3.82 0:890 [C] 55.13
1:50 [TRP] 0:772 [G] 2.89 0:889 [C] sugar:SC 55.13
1:50 [TRP] 0:773 [A] 3.43 0:888 [U] 55.13
1:50 [TRP] 0:890 [C] 2.51 0:771 [G] sugar:BB 55.13
1:50 [TRP] 0:891 [G] 3.12 0:770 [C] sugar:BB 55.13
1:51 [GLN] 0:472 [A] 4.78 0:469 [G] 27.58
1:51 [GLN] 0:473 [A] 2.72 0:468 [U] 27.58
1:51 [GLN] 0:890 [C] 4.14 0:771 [G] 27.58
1:52 [SER] 0:178 [U] 4.97 0:158 [A] 28.91
1:52 [SER] 0:890 [C] 4.98 0:771 [G] 28.91
1:52 [SER] 0:891 [G] 3.85 0:770 [C] 28.91
1:52 [SER] 0:892 [G] 5.0 0:769 [C] 28.91
1:53 [LYS] 0:891 [G] 3.58 0:770 [C] 72.03
1:53 [LYS] 0:892 [G] 3.07 0:769 [C] 72.03
1:53 [LYS] 0:893 [C] 3.74 0:768 [U] 72.03
1:53 [LYS] 0:894 [A] 2.97 72.03
1:54 [ALA] 0:177 [A] 3.71 0:159 [G] 51.89
1:54 [ALA] 0:178 [U] 3.82 0:158 [A] 51.89
1:54 [ALA] 0:891 [G] 3.82 0:770 [C] 51.89
1:54 [ALA] 0:892 [G] 2.94 0:769 [C] 51.89
1:56 [GLU] 0:152 [A] 4.64 0:185 [G] 57.72

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group55 1YHQ_1_0 1: 50s ribosomal protein l37e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P32410 Rubredoxin-related Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_1_0 1YHQ_1_0 0.99 1.0 0.16 0.98 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1YHQ_1_0 6AZ3_j_1,2 0.77 0.78 2.23 0.29 Rubredoxin-related compare
1YHQ_1_0 7O7Y_Bj_B5 0.80 0.94 1.94 0.31 Rubredoxin-related compare