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All interfaces > All interologs > Interface groups > group55 > 1YHQ_1_0 vs 6AZ3_j_1,2

Interface analysis


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Licorice
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RNA

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Licorice
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Common contacts -

1YHQ_1
1YHQ_0
6AZ3_j
6AZ3_1,2
Conserved?
1:4 [GLY] 0:845 [U] j:4 [GLY] 1:935 [A] ✔
1:4 [GLY] 0:882 [A] j:4 [GLY] 1:972 [A] ✔
1:4 [GLY] 0:1837 [G] j:4 [GLY] 2:2167 [A] ✔
1:10 [LYS] 0:777 [U] j:10 [GLN] 1:868 [A] ✔
1:10 [LYS] 0:778 [C] j:10 [GLN] 1:869 [C] ✔
1:10 [LYS] 0:779 [U] j:10 [GLN] 1:870 [U] ✔
1:10 [LYS] 0:1695 [G] j:10 [GLN] 2:1817 [G] ✔
1:10 [LYS] 0:1696 [U] j:10 [GLN] 2:1818 [U] ✔
1:9 [GLY] 0:1687 [C] j:9 [GLY] 2:1809 [C] ✔
1:9 [GLY] 0:1694 [G] j:9 [GLY] 2:1816 [G] ✔
1:9 [GLY] 0:1695 [G] j:9 [GLY] 2:1817 [G] ✔
1:9 [GLY] 0:1696 [U] j:9 [GLY] 2:1818 [U] ✔
1:45 [ARG] 0:148 [A] j:44 [ARG] 1:20 [G] ✔
1:45 [ARG] 0:149 [G] j:44 [ARG] 1:21 [A] ✔
1:26 [SER] 0:471 [G] j:26 [SER] 1:400 [G] ✔
1:26 [SER] 0:472 [A] j:26 [SER] 1:401 [A] ✔
1:51 [GLN] 0:473 [A] j:50 [SER] 1:402 [G] ✔
1:51 [GLN] 0:890 [C] j:50 [SER] 1:980 [A] ✔
1:50 [TRP] 0:178 [U] j:49 [TRP] 1:50 [A] ✔
1:50 [TRP] 0:179 [C] j:49 [TRP] 1:51 [G] ✔
1:50 [TRP] 0:472 [A] j:49 [TRP] 1:401 [A] ✔
1:50 [TRP] 0:473 [A] j:49 [TRP] 1:402 [G] ✔
1:50 [TRP] 0:772 [G] j:49 [TRP] 1:863 [G] ✔
1:50 [TRP] 0:773 [A] j:49 [TRP] 1:864 [G] ✔
1:50 [TRP] 0:890 [C] j:49 [TRP] 1:980 [A] ✔
1:50 [TRP] 0:891 [G] j:49 [TRP] 1:981 [C] ✔
1:7 [SER] 0:778 [C] j:7 [SER] 1:869 [C] ✔
1:7 [SER] 0:1836 [A] j:7 [SER] 2:2166 [A] ✔
1:16 [HIS] 0:470 [U] j:16 [HIS] 1:399 [U] ✔
1:16 [HIS] 0:471 [G] j:16 [HIS] 1:400 [G] ✔
1:16 [HIS] 0:774 [C] j:16 [HIS] 1:865 [U] ✔
1:16 [HIS] 0:775 [G] j:16 [HIS] 1:866 [G] ✔
1:44 [LYS] 0:148 [A] j:43 [SER] 1:20 [G] ✔
1:44 [LYS] 0:149 [G] j:43 [SER] 1:21 [A] ✔
1:35 [SER] 0:471 [G] j:35 [ALA] 1:400 [G] ✔
1:35 [SER] 0:472 [A] j:35 [ALA] 1:401 [A] ✔
1:35 [SER] 0:774 [C] j:35 [ALA] 1:865 [U] ✔
1:35 [SER] 0:775 [G] j:35 [ALA] 1:866 [G] ✔
1:31 [LYS] 0:775 [G] j:31 [TRP] 1:866 [G] ✔
1:31 [LYS] 0:776 [A] j:31 [TRP] 1:867 [A] ✔
1:11 [LYS] 0:777 [U] j:11 [ARG] 1:868 [A] ✔
1:11 [LYS] 0:778 [C] j:11 [ARG] 1:869 [C] ✔
1:11 [LYS] 0:881 [C] j:11 [ARG] 1:971 [C] ✔
1:11 [LYS] 0:1687 [C] j:11 [ARG] 2:1809 [C] ✔
1:3 [ALA] 0:882 [A] j:3 [LYS] 1:972 [A] ✔
1:3 [ALA] 0:883 [U] j:3 [LYS] 1:973 [U] ✔
1:3 [ALA] 0:1836 [A] j:3 [LYS] 2:2166 [A] ✔
1:3 [ALA] 0:1837 [G] j:3 [LYS] 2:2167 [A] ✔
1:36 [SER] 0:472 [A] j:36 [ALA] 1:401 [A] ✔
1:48 [TYR] 0:179 [C] j:47 [TYR] 1:51 [G] ✔
1:48 [TYR] 0:180 [G] j:47 [TYR] 1:52 [C] ✔
1:48 [TYR] 0:772 [G] j:47 [TYR] 1:863 [G] ✔
1:48 [TYR] 0:773 [A] j:47 [TYR] 1:864 [G] ✔
1:48 [TYR] 0:1473 [U] j:47 [TYR] 1:1657 [U] ✔
1:28 [HIS] 0:775 [G] j:28 [HIS] 1:866 [G] ✔
1:28 [HIS] 0:776 [A] j:28 [HIS] 1:867 [A] ✔
1:43 [ALA] 0:148 [A] j:42 [ALA] 1:20 [G] ✔
1:34 [CYS] 0:774 [C] j:34 [CYS] 1:865 [U] ✔
1:47 [ASP] 0:179 [C] j:46 [ARG] 1:51 [G] ✔
1:8 [GLN] 0:882 [A] j:8 [MET] 1:972 [A] ✔
1:8 [GLN] 0:1687 [C] j:8 [MET] 2:1809 [C] ✔
1:8 [GLN] 0:1688 [G] j:8 [MET] 2:1810 [G] ✔
1:8 [GLN] 0:1694 [G] j:8 [MET] 2:1816 [G] ✔
1:6 [PRO] 0:846 [A] j:6 [THR] 1:936 [U] ✔
1:6 [PRO] 0:1694 [G] j:6 [THR] 2:1816 [G] ✔
1:6 [PRO] 0:1695 [G] j:6 [THR] 2:1817 [G] ✔
1:12 [ASN] 0:777 [U] j:12 [HIS] 1:868 [A] ✔
1:12 [ASN] 0:862 [U] j:12 [HIS] 1:952 [G] ✔
1:12 [ASN] 0:1414 [A] j:12 [HIS] 1:1597 [A] ✔
1:12 [ASN] 0:1415 [G] j:12 [HIS] 1:1598 [G] ✔
1:12 [ASN] 0:1696 [U] j:12 [HIS] 2:1818 [U] ✔
1:5 [THR] 0:843 [A] j:5 [THR] 1:933 [A] ✔
1:5 [THR] 0:844 [A] j:5 [THR] 1:934 [A] ✔
1:5 [THR] 0:845 [U] j:5 [THR] 1:935 [A] ✔
1:5 [THR] 0:882 [A] j:5 [THR] 1:972 [A] ✔
1:5 [THR] 0:1688 [G] j:5 [THR] 2:1810 [G] ✔
1:5 [THR] 0:1694 [G] j:5 [THR] 2:1816 [G] ✔
1:2 [GLY] 0:845 [U] j:2 [THR] 1:935 [A] ✔
1:2 [GLY] 0:846 [A] j:2 [THR] 1:936 [U] ✔
1:2 [GLY] 0:1836 [A] j:2 [THR] 2:2166 [A] ✔
1:2 [GLY] 0:1837 [G] j:2 [THR] 2:2167 [A] ✔
1:13 [THR] 0:777 [U] j:13 [GLY] 1:868 [A] ✔
1:13 [THR] 0:1414 [A] j:13 [GLY] 1:1597 [A] ✔
1:13 [THR] 0:1415 [G] j:13 [GLY] 1:1598 [G] ✔
1:30 [LYS] 0:864 [U] j:30 [GLN] 1:954 [U] ✔
1:46 [ARG] 0:472 [A] j:45 [ARG] 1:401 [A] ✔
1:46 [ARG] 0:473 [A] j:45 [ARG] 1:402 [G] ✔
1:46 [ARG] 0:773 [A] j:45 [ARG] 1:864 [G] ✔
1:46 [ARG] 0:774 [C] j:45 [ARG] 1:865 [U] ✔
1:25 [LYS] 0:470 [U] j:25 [ASN] 1:399 [U] ✔
1:25 [LYS] 0:471 [G] j:25 [ASN] 1:400 [G] ✔
1:42 [SER] 0:1473 [U] j:41 [ARG] 1:1657 [U] ✔
1:49 [GLU] 0:178 [U] j:48 [ASN] 1:50 [A] ✔
1:49 [GLU] 0:179 [C] j:48 [ASN] 1:51 [G] ✔
1:14 [THR] 0:1415 [G] j:14 [ARG] 1:1598 [G] ✔
1:14 [THR] 0:1416 [G] j:14 [ARG] 1:1599 [G] ✔
1:15 [THR] 0:470 [U] j:15 [THR] 1:399 [U] ✔
1:15 [THR] 0:776 [A] j:15 [THR] 1:867 [A] ✔
1:15 [THR] 0:777 [U] j:15 [THR] 1:868 [A] ✔
1:45 [ARG] 0:1473 [U] j:44 [ARG] 1:1657 [U] ❌ 6AZ3_j_1,2
1:51 [GLN] 0:472 [A] j:50 [SER] 1:401 [A] ❌ 6AZ3_j_1,2
1:7 [SER] 0:779 [U] j:7 [SER] 1:870 [U] ❌ 6AZ3_j_1,2
1:7 [SER] 0:1695 [G] j:7 [SER] 2:1817 [G] ❌ 6AZ3_j_1,2
1:44 [LYS] 0:1473 [U] j:43 [SER] 1:1657 [U] ❌ 6AZ3_j_1,2
1:3 [ALA] 0:778 [C] j:3 [LYS] 1:869 [C] ❌ 6AZ3_j_1,2
1:36 [SER] 0:473 [A] j:36 [ALA] 1:402 [G] ❌ 6AZ3_j_1,2
1:48 [TYR] 0:774 [C] j:47 [TYR] 1:865 [U] ❌ 6AZ3_j_1,2
1:53 [LYS] 0:891 [G] j:52 [LYS] 1:981 [C] ❌ 6AZ3_j_1,2
1:8 [GLN] 0:1695 [G] j:8 [MET] 2:1817 [G] ❌ 6AZ3_j_1,2
1:52 [SER] 0:178 [U] j:51 [VAL] 1:50 [A] ❌ 6AZ3_j_1,2
1:52 [SER] 0:890 [C] j:51 [VAL] 1:980 [A] ❌ 6AZ3_j_1,2
1:52 [SER] 0:891 [G] j:51 [VAL] 1:981 [C] ❌ 6AZ3_j_1,2
1:6 [PRO] 0:845 [U] j:6 [THR] 1:935 [A] ❌ 6AZ3_j_1,2
1:5 [THR] 0:1695 [G] j:5 [THR] 2:1817 [G] ❌ 6AZ3_j_1,2
1:30 [LYS] 0:862 [U] j:30 [GLN] 1:952 [G] ❌ 6AZ3_j_1,2
1:14 [THR] 0:1414 [A] j:14 [ARG] 1:1597 [A] ❌ 6AZ3_j_1,2
1:11 [LYS] 0:882 [A] j:11 [ARG] 1:972 [A] ❌ 1YHQ_1_0
1:11 [LYS] 0:470 [U] j:11 [ARG] 1:399 [U] ❌ 1YHQ_1_0
1:14 [THR] 0:777 [U] j:14 [ARG] 1:868 [A] ❌ 1YHQ_1_0
1:15 [THR] 0:775 [G] j:15 [THR] 1:866 [G] ❌ 1YHQ_1_0
1:15 [THR] 0:881 [C] j:15 [THR] 1:971 [C] ❌ 1YHQ_1_0
1:26 [SER] 0:775 [G] j:26 [SER] 1:866 [G] ❌ 1YHQ_1_0
1:29 [THR] 0:864 [U] j:29 [VAL] 1:954 [U] ❌ 1YHQ_1_0
1:3 [ALA] 0:845 [U] j:3 [LYS] 1:935 [A] ❌ 1YHQ_1_0
1:30 [LYS] 0:777 [U] j:30 [GLN] 1:868 [A] ❌ 1YHQ_1_0
1:4 [GLY] 0:1688 [G] j:4 [GLY] 2:1810 [G] ❌ 1YHQ_1_0
1:47 [ASP] 0:152 [A] j:46 [ARG] 1:24 [A] ❌ 1YHQ_1_0
1:47 [ASP] 0:180 [G] j:46 [ARG] 1:52 [C] ❌ 1YHQ_1_0
1:48 [TYR] 0:178 [U] j:47 [TYR] 1:50 [A] ❌ 1YHQ_1_0
1:49 [GLU] 0:152 [A] j:48 [ASN] 1:24 [A] ❌ 1YHQ_1_0
1:10 [LYS] 0:861 [A] j:10 [GLN] 1:951 [G] ❌ 6AZ3_1:951 no longer at interface
1:9 [GLY] 0:1686 [C] j:9 [GLY] 2:1808 [C] ❌ 6AZ3_2:26 no longer at interface
1:50 [TRP] 0:771 [G] j:49 [TRP] 1:862 [U] ❌ 6AZ3_1:862 no longer at interface
1:44 [LYS] 0:181 [G] j:43 [SER] 1:53 [G] ❌ 6AZ3_1:53 no longer at interface
1:44 [LYS] 0:182 [G] j:43 [SER] 1:54 [G] ❌ 6AZ3_1:54 no longer at interface
1:40 [GLY] 0:1463 [U] j:40 [PRO] 1:1647 [C] ❌ 6AZ3_j:40, 6AZ3_1:1647 no longer at interface
1:53 [LYS] 0:892 [G] j:52 [LYS] 1:982 [C] ❌ 6AZ3_1:982 no longer at interface
1:53 [LYS] 0:893 [C] j:52 [LYS] 1:983 [U] ❌ 6AZ3_1:983 no longer at interface
1:53 [LYS] 0:894 [A] j:52 [LYS] 1:984 [A] ❌ 6AZ3_1:984 no longer at interface
1:52 [SER] 0:892 [G] j:51 [VAL] 1:982 [C] ❌ 6AZ3_1:982 no longer at interface
1:12 [ASN] 0:1413 [A] j:12 [HIS] 1:1596 [A] ❌ 6AZ3_1:1596 no longer at interface
1:12 [ASN] 0:1686 [C] j:12 [HIS] 2:1808 [C] ❌ 6AZ3_2:26 no longer at interface
1:13 [THR] 0:863 [G] j:13 [GLY] 1:953 [G] ❌ 6AZ3_1:953 no longer at interface
1:30 [LYS] 0:863 [G] j:30 [GLN] 1:953 [G] ❌ 6AZ3_1:953 no longer at interface
1:24 [GLU] 0:468 [U] j:24 [ARG] 1:397 [C] ❌ 1YHQ_1:24, 1YHQ_0:468 no longer at interface
1:24 [GLU] 0:469 [G] j:24 [ARG] 1:398 [G] ❌ 1YHQ_1:24, 1YHQ_0:469 no longer at interface
1:3 [ALA] 0:879 [C] j:3 [LYS] 1:969 [C] ❌ 1YHQ_0:879 no longer at interface
1:30 [LYS] 0:865 [G] j:30 [GLN] 1:955 [A2M] ❌ 1YHQ_0:865 no longer at interface
1:31 [LYS] 0:865 [G] j:31 [TRP] 1:955 [A2M] ❌ 1YHQ_0:865 no longer at interface
1:31 [LYS] 0:866 [U] j:31 [TRP] 1:956 [U] ❌ 1YHQ_0:866 no longer at interface
1:32 [LYS] 0:1461 [U] j:32 [GLU] 1:1645 [C] ❌ 1YHQ_0:1461 no longer at interface
1:47 [ASP] 0:151 [A] j:46 [ARG] 1:23 [U] ❌ 1YHQ_0:151 no longer at interface
1:47 [ASP] 0:150 [G] j:46 [ARG] 1:22 [C] ❌ 1YHQ_0:150 no longer at interface
1:50 [TRP] 0:889 [C] j:49 [TRP] 1:979 [C] ❌ 1YHQ_0:889 no longer at interface
1:51 [GLN] 0:474 [C] j:50 [SER] 1:403 [C] ❌ 1YHQ_0:474 no longer at interface
1:53 [LYS] 0:475 [G] j:52 [LYS] 1:404 [G] ❌ 1YHQ_0:475 no longer at interface
1:53 [LYS] 0:474 [C] j:52 [LYS] 1:403 [C] ❌ 1YHQ_0:474 no longer at interface
1:53 [LYS] 0:464 [G] j:52 [LYS] 1:393 [G] ❌ 1YHQ_0:464 no longer at interface
1:24 [GLU] 0:472 [A] j:24 [ARG] 1:401 [A] ❌ 1YHQ_1:24 no longer at interface
1:24 [GLU] 0:473 [A] j:24 [ARG] 1:402 [G] ❌ 1YHQ_1:24 no longer at interface
1:33 [VAL] 0:774 [C] j:33 [ARG] 1:865 [U] ❌ 1YHQ_1:33 no longer at interface
1:33 [VAL] 0:775 [G] j:33 [ARG] 1:866 [G] ❌ 1YHQ_1:33 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related 0.78 2.23 0.29 0.79 0.79 0.73 0.68 0.77 0.77 0.31 0.51


Other pairs involving 1YHQ_1_0 or 6AZ3_j_1,2

Total number of entries: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_1_0 1YHQ_1_0 0.99 1.0 0.16 0.98 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_1_0 6AZ3_j_1,2 0.79 0.78 2.17 0.29 Rubredoxin-related compare
1YHQ_1_0 6AZ3_j_1,2 0.77 0.78 2.23 0.29 Rubredoxin-related compare
1YHQ_1_0 7O7Y_Bj_B5 0.80 0.94 1.94 0.31 Rubredoxin-related compare
6AZ3_j_1,2 7O7Y_Bj_B5 0.76 0.92 0.94 0.44 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare