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All interfaces > All interologs > Interface groups > group55 > 6AZ3_j_1,2

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_j
6AZ3_1,2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
j:2 [THR] 1:935 [A] 3.28 54.99
j:2 [THR] 1:936 [U] 3.97 1:927 [A2M] 54.99
j:2 [THR] 2:2166 [A] 3.33 1:869 [C] 54.99
j:2 [THR] 2:2167 [A] 3.72 54.99
j:3 [LYS] 1:935 [A] 4.84 73.61
j:3 [LYS] 1:969 [C] 4.5 1:961 [G] 73.61
j:3 [LYS] 1:972 [A] 3.02 sugar:BB 73.61
j:3 [LYS] 1:973 [U] 3.51 73.61
j:3 [LYS] 2:2166 [A] 3.04 1:869 [C] sugar:BB 73.61
j:3 [LYS] 2:2167 [A] 3.54 sugar:SC 73.61
j:4 [GLY] 1:935 [A] 3.29 89.02
j:4 [GLY] 1:972 [A] 3.48 89.02
j:4 [GLY] 2:1810 [G] 4.81 89.02
j:4 [GLY] 2:2167 [A] 3.69 89.02
j:5 [THR] 1:933 [A] 3.42 1:928 [C] sugar:SC 93.33
j:5 [THR] 1:934 [A] 4.33 93.33
j:5 [THR] 1:935 [A] 2.45 93.33
j:5 [THR] 1:972 [A] 4.01 93.33
j:5 [THR] 2:1810 [G] 3.32 sugar:SC 93.33
j:5 [THR] 2:1816 [G] 3.05 2:1809 [C] base:BB 93.33
j:6 [THR] 1:936 [U] 2.67 1:927 [A2M] 34.88
j:6 [THR] 2:1816 [G] 2.65 2:1809 [C] sugar:SC 34.88
j:6 [THR] 2:1817 [G] 3.42 2:1808 [C] sugar:BB 34.88
j:7 [SER] 1:869 [C] 3.24 2:2166 [A] 83.68
j:7 [SER] 2:2166 [A] 4.13 1:869 [C] 83.68
j:8 [MET] 1:972 [A] 3.48 31.97
j:8 [MET] 2:1809 [C] 2.46 2:1816 [G] sugar:BB 31.97
j:8 [MET] 2:1810 [G] 3.29 31.97
j:8 [MET] 2:1816 [G] 4.07 2:1809 [C] 31.97
j:9 [GLY] 2:1809 [C] 3.6 2:1816 [G] 91.94
j:9 [GLY] 2:1816 [G] 3.36 2:1809 [C] 91.94
j:9 [GLY] 2:1817 [G] 3.42 2:1808 [C] base:BB 91.94
j:9 [GLY] 2:1818 [U] 3.87 2:1804 [A] 91.94
j:10 [GLN] 1:868 [A] 4.19 56.95
j:10 [GLN] 1:869 [C] 3.37 2:2166 [A] 56.95
j:10 [GLN] 1:870 [U] 3.59 1:867 [A] 56.95
j:10 [GLN] 2:1817 [G] 2.49 2:1808 [C] sugar:SC 56.95
j:10 [GLN] 2:1818 [U] 3.83 2:1804 [A] 56.95
j:11 [ARG] 1:399 [U] 4.48 68.01
j:11 [ARG] 1:868 [A] 3.34 68.01
j:11 [ARG] 1:869 [C] 3.63 2:2166 [A] 68.01
j:11 [ARG] 1:971 [C] 3.25 base:SC 68.01
j:11 [ARG] 1:972 [A] 3.69 68.01
j:11 [ARG] 2:1809 [C] 4.77 2:1816 [G] 68.01
j:12 [HIS] 1:868 [A] 3.55 53.21
j:12 [HIS] 1:952 [G] 4.02 1:875 [C] 53.21
j:12 [HIS] 1:1597 [A] 3.04 2:1803 [C] 53.21
j:12 [HIS] 1:1598 [G] 3.87 2:1802 [U] 53.21
j:12 [HIS] 2:1818 [U] 3.25 2:1804 [A] 53.21
j:13 [GLY] 1:868 [A] 3.5 64.35
j:13 [GLY] 1:1597 [A] 3.9 2:1803 [C] 64.35
j:13 [GLY] 1:1598 [G] 4.21 2:1802 [U] 64.35
j:14 [ARG] 1:868 [A] 3.73 45.8
j:14 [ARG] 1:1598 [G] 3.18 2:1802 [U] 45.8
j:14 [ARG] 1:1599 [G] 2.98 2:1801 [C] 45.8
j:15 [THR] 1:399 [U] 3.74 69.44
j:15 [THR] 1:866 [G] 4.19 69.44
j:15 [THR] 1:867 [A] 3.06 1:870 [U] 69.44
j:15 [THR] 1:868 [A] 2.96 base:BB 69.44
j:15 [THR] 1:971 [C] 3.29 base:SC 69.44
j:16 [HIS] 1:399 [U] 2.92 sugar:SC 97.48
j:16 [HIS] 1:400 [G] 3.15 sugar:SC 97.48
j:16 [HIS] 1:865 [U] 4.17 1:977 [A] 97.48
j:16 [HIS] 1:866 [G] 2.42 97.48
j:24 [ARG] 1:397 [C] 4.98 1:402 [G] 46.14
j:24 [ARG] 1:398 [G] 3.93 1:401 [A] 46.14
j:24 [ARG] 1:401 [A] 3.29 1:398 [G] 46.14
j:24 [ARG] 1:402 [G] 3.01 1:397 [C] base:SC, base:SC 46.14
j:25 [ASN] 1:399 [U] 4.72 42.2
j:25 [ASN] 1:400 [G] 3.26 42.2
j:26 [SER] 1:400 [G] 3.27 84.08
j:26 [SER] 1:401 [A] 2.51 1:398 [G] 84.08
j:26 [SER] 1:866 [G] 4.63 84.08
j:28 [HIS] 1:866 [G] 3.5 91.14
j:28 [HIS] 1:867 [A] 2.93 1:870 [U] 91.14
j:29 [VAL] 1:954 [U] 4.52 1:873 [G] 28.63
j:30 [GLN] 1:868 [A] 3.28 53.93
j:30 [GLN] 1:954 [U] 3.44 1:873 [G] 53.93
j:30 [GLN] 1:955 [A2M] 2.97 1:872 [U] 53.93
j:31 [TRP] 1:866 [G] 3.45 59.07
j:31 [TRP] 1:867 [A] 3.58 1:870 [U] 59.07
j:31 [TRP] 1:955 [A2M] 4.7 1:872 [U] 59.07
j:31 [TRP] 1:956 [U] 4.61 1:871 [A] 59.07
j:32 [GLU] 1:1645 [C] 3.99 1:1736 [G] sugar:SC 14.6
j:33 [ARG] 1:865 [U] 3.08 1:977 [A] 34.76
j:33 [ARG] 1:866 [G] 2.36 34.76
j:34 [CYS] 1:865 [U] 4.88 1:977 [A] 86.97
j:35 [ALA] 1:400 [G] 3.37 76.3
j:35 [ALA] 1:401 [A] 3.26 1:398 [G] 76.3
j:35 [ALA] 1:865 [U] 3.44 1:977 [A] 76.3
j:35 [ALA] 1:866 [G] 3.44 76.3
j:36 [ALA] 1:401 [A] 3.9 1:398 [G] 60.64
j:41 [ARG] 1:1657 [U] 3.31 sugar:SC base/AA stacks 38.49
j:42 [ALA] 1:20 [G] 3.31 52.81
j:43 [SER] 1:20 [G] 3.61 48.3
j:43 [SER] 1:21 [A] 4.04 48.3
j:44 [ARG] 1:20 [G] 4.23 12.15
j:44 [ARG] 1:21 [A] 3.2 12.15
j:45 [ARG] 1:401 [A] 3.23 1:398 [G] 72.62
j:45 [ARG] 1:402 [G] 3.09 1:397 [C] 72.62
j:45 [ARG] 1:864 [G] 2.63 1:978 [C] sugar:SC 72.62
j:45 [ARG] 1:865 [U] 3.81 1:977 [A] 72.62
j:46 [ARG] 1:22 [C] 3.13 4.03
j:46 [ARG] 1:23 [U] 2.7 4.03
j:46 [ARG] 1:24 [A] 4.42 1:57 [G] 4.03
j:46 [ARG] 1:51 [G] 4.55 1:29 [C] 4.03
j:46 [ARG] 1:52 [C] 4.5 1:28 [G] 4.03
j:47 [TYR] 1:50 [A] 4.94 1:30 [C] 48.57
j:47 [TYR] 1:51 [G] 3.29 1:29 [C] 48.57
j:47 [TYR] 1:52 [C] 3.87 1:28 [G] 48.57
j:47 [TYR] 1:863 [G] 3.71 1:979 [C] 48.57
j:47 [TYR] 1:864 [G] 3.3 1:978 [C] 48.57
j:47 [TYR] 1:1657 [U] 4.69 48.57
j:48 [ASN] 1:24 [A] 4.62 1:57 [G] 58.71
j:48 [ASN] 1:50 [A] 3.9 1:30 [C] 58.71
j:48 [ASN] 1:51 [G] 2.7 1:29 [C] 58.71
j:49 [TRP] 1:50 [A] 3.63 1:30 [C] 53.69
j:49 [TRP] 1:51 [G] 4.0 1:29 [C] 53.69
j:49 [TRP] 1:401 [A] 3.99 1:398 [G] 53.69
j:49 [TRP] 1:402 [G] 4.38 1:397 [C] 53.69
j:49 [TRP] 1:863 [G] 2.83 1:979 [C] sugar:SC 53.69
j:49 [TRP] 1:864 [G] 3.81 1:978 [C] 53.69
j:49 [TRP] 1:979 [C] 4.77 1:863 [G] 53.69
j:49 [TRP] 1:980 [A] 2.5 1:862 [U] sugar:BB 53.69
j:49 [TRP] 1:981 [C] 3.08 1:861 [G] sugar:BB 53.69
j:50 [SER] 1:402 [G] 3.97 1:397 [C] 53.55
j:50 [SER] 1:403 [C] 4.03 1:396 [G] 53.55
j:50 [SER] 1:980 [A] 3.41 1:862 [U] 53.55
j:51 [VAL] 1:368 [G] 3.82 0.0
j:52 [LYS] 1:368 [G] 4.96 80.29
j:52 [LYS] 1:393 [G] 3.5 80.29
j:52 [LYS] 1:403 [C] 3.77 1:396 [G] 80.29
j:52 [LYS] 1:404 [G] 2.37 1:395 [A] 80.29
j:53 [ALA] 1:402 [G] 3.85 1:397 [C] 53.32
j:53 [ALA] 1:403 [C] 4.69 1:396 [G] 53.32
j:54 [ILE] 1:23 [U] 3.86 2.19
j:55 [LYS] 1:23 [U] 4.78 63.51
j:55 [LYS] 1:368 [G] 2.93 sugar:SC 63.51
j:55 [LYS] 1:369 [A] 4.64 7:34 [U] 63.51
j:56 [ARG] 1:393 [G] 3.36 77.57
j:56 [ARG] 1:402 [G] 4.29 1:397 [C] 77.57
j:56 [ARG] 1:403 [C] 2.36 1:396 [G] 77.57
j:56 [ARG] 1:404 [G] 3.19 1:395 [A] base:SC, base:SC 77.57
j:57 [ARG] 1:22 [C] 3.59 53.79
j:57 [ARG] 1:402 [G] 4.17 1:397 [C] 53.79
j:58 [ARG] 1:22 [C] 4.14 73.36
j:58 [ARG] 1:23 [U] 3.63 73.36
j:58 [ARG] 1:369 [A] 3.75 7:34 [U] 73.36
j:58 [ARG] 1:370 [G] 3.07 7:33 [U] 73.36
j:59 [THR] 1:21 [A] 3.36 sugar:SC 65.12
j:59 [THR] 1:22 [C] 3.64 65.12
j:71 [ASN] 1:371 [U] 3.6 7:31 [A] 37.72
j:75 [ALA] 1:372 [A] 4.54 7:30 [U] 58.92
j:76 [ASN] 1:273 [A] 3.61 59.76
j:77 [HIS] 1:273 [A] 3.34 base:BB 44.92
j:77 [HIS] 1:274 [A] 4.11 44.92
j:78 [PHE] 1:273 [A] 3.28 62.76
j:79 [LYS] 1:273 [A] 3.46 67.34
j:80 [THR] 1:273 [A] 3.24 29.01
j:81 [PRO] 1:273 [A] 4.45 61.93

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group55 6AZ3_j_1,2 j: 60s ribosomal protein l37, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) P62885 Rubredoxin-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_j_1,2 7O7Y_Bj_B5 0.76 0.92 0.94 0.44 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare
1VQ8_1_0 6AZ3_j_1,2 0.79 0.78 2.17 0.29 Rubredoxin-related compare
1YHQ_1_0 6AZ3_j_1,2 0.77 0.78 2.23 0.29 Rubredoxin-related compare