Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_c
|
6AZ3_8
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| c:106 [ASN] | 8:84 [G] | 4.73 | 8:96 [C] | 49.1 | ||
| c:138 [ARG] | 8:98 [C] | 3.58 | 8:82 [G] | 62.1 | ||
| c:138 [ARG] | 8:99 [G] | 2.91 | 8:81 [U] | 62.1 | ||
| c:141 [GLU] | 8:98 [C] | 2.88 | 8:82 [G] | sugar:SC, sugar:SC | 68.7 | |
| c:142 [PRO] | 8:83 [A] | 3.89 | 8:97 [U] | 80.3 | ||
| c:142 [PRO] | 8:84 [G] | 3.8 | 8:96 [C] | 80.3 | ||
| c:226 [GLN] | 8:87 [C] | 4.75 | 8:94 [G] | 36.9 | ||
| c:228 [ARG] | 8:84 [G] | 3.18 | 8:96 [C] | sugar:BB | 37.2 | |
| c:228 [ARG] | 8:85 [G] | 3.39 | 8:95 [A] | sugar:SC | 37.2 | |
| c:228 [ARG] | 8:86 [U] | 2.72 | 37.2 | |||
| c:228 [ARG] | 8:87 [C] | 2.84 | 8:94 [G] | 37.2 | ||
| c:229 [ARG] | 8:84 [G] | 4.64 | 8:96 [C] | 34.0 | ||
| c:229 [ARG] | 8:85 [G] | 3.17 | 8:95 [A] | base:SC | 34.0 | |
| c:229 [ARG] | 8:87 [C] | 3.71 | 8:94 [G] | sugar:SC | 34.0 | |
| c:229 [ARG] | 8:96 [C] | 4.65 | 8:84 [G] | 34.0 | ||
| c:230 [HIS] | 8:97 [U] | 3.3 | 8:83 [A] | 54.5 | ||
| c:230 [HIS] | 8:98 [C] | 3.67 | 8:82 [G] | 54.5 | ||
| c:232 [VAL] | 8:97 [U] | 3.93 | 8:83 [A] | 19.5 | ||
| c:232 [VAL] | 8:98 [C] | 4.0 | 8:82 [G] | 19.5 | ||
| c:233 [GLU] | 8:84 [G] | 2.61 | 8:96 [C] | base:SC | 58.4 | |
| c:233 [GLU] | 8:85 [G] | 4.61 | 8:95 [A] | 58.4 | ||
| c:233 [GLU] | 8:96 [C] | 3.77 | 8:84 [G] | 58.4 | ||
| c:233 [GLU] | 8:97 [U] | 3.25 | 8:83 [A] | 58.4 | ||
| c:237 [TYR] | 8:84 [G] | 3.24 | 8:96 [C] | sugar:SC | 25.3 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group57 | 6AZ3_c_8 | c: 60s ribosomal protein l7 family protein, Leishmania donovani (natural) 8: rRNA 5s, Leishmania donovani (natural) | A0A504XVT8 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_c_8 | 7O7Y_BF_B7 | 0.90 | 0.95 | 0.44 | 0.44 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |
| 1YHQ_W_9 | 6AZ3_c_8 | 0.72 | 0.85 | 1.04 | 0.09 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |
| 1VQ8_W_9 | 6AZ3_c_8 | 0.72 | 0.85 | 1.01 | 0.09 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |