Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
1VQ8_W
|
1VQ8_9
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
W:8 [ARG] | 9:3085 [A] | 3.19 | 9:3097 [U] | 95.08 | ||
W:8 [ARG] | 9:3086 [G] | 2.78 | 9:3096 [C] | 95.08 | ||
W:14 [HIS] | 9:3084 [G] | 3.51 | 9:3098 [C] | 50.69 | ||
W:14 [HIS] | 9:3085 [A] | 3.26 | 9:3097 [U] | 50.69 | ||
W:17 [ILE] | 9:3084 [G] | 4.04 | 9:3098 [C] | 73.39 | ||
W:46 [ALA] | 9:3083 [G] | 4.93 | 9:3099 [U] | 44.27 | ||
W:46 [ALA] | 9:3099 [U] | 4.35 | 9:3083 [G] | 44.27 | ||
W:46 [ALA] | 9:3100 [G] | 4.34 | 9:3082 [U] | 44.27 | ||
W:47 [LYS] | 9:3084 [G] | 4.55 | 9:3098 [C] | 79.72 | ||
W:49 [ASN] | 9:3099 [U] | 3.4 | 9:3083 [G] | 79.4 | ||
W:50 [ASP] | 9:3084 [G] | 2.85 | 9:3098 [C] | base:SC, sugar:SC | 82.48 | |
W:50 [ASP] | 9:3085 [A] | 3.03 | 9:3097 [U] | base/AA stacks | 82.48 | |
W:50 [ASP] | 9:3098 [C] | 4.63 | 9:3084 [G] | 82.48 | ||
W:51 [PHE] | 9:3084 [G] | 4.66 | 9:3098 [C] | 60.42 | ||
W:51 [PHE] | 9:3085 [A] | 3.65 | 9:3097 [U] | 60.42 | ||
W:128 [VAL] | 9:3086 [G] | 4.94 | 9:3096 [C] | 74.99 | ||
W:129 [LYS] | 9:3086 [G] | 2.93 | 9:3096 [C] | sugar:BB | 92.09 | |
W:129 [LYS] | 9:3087 [U] | 2.59 | 92.09 | |||
W:129 [LYS] | 9:3088 [G] | 4.88 | 9:3095 [C] | 92.09 | ||
W:130 [HIS] | 9:3086 [G] | 3.89 | 9:3096 [C] | 52.54 | ||
W:130 [HIS] | 9:3087 [U] | 4.92 | 52.54 | |||
W:130 [HIS] | 9:3088 [G] | 2.41 | 9:3095 [C] | 52.54 | ||
W:131 [PRO] | 9:3098 [C] | 3.31 | 9:3084 [G] | 53.43 | ||
W:133 [LYS] | 9:3098 [C] | 3.64 | 9:3084 [G] | 35.04 | ||
W:133 [LYS] | 9:3099 [U] | 2.86 | 9:3083 [G] | 35.04 | ||
W:134 [GLU] | 9:3097 [U] | 2.93 | 9:3085 [A] | 17.41 | ||
W:134 [GLU] | 9:3098 [C] | 3.73 | 9:3084 [G] | 17.41 | ||
W:138 [LEU] | 9:3085 [A] | 4.69 | 9:3097 [U] | 85.26 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group57 | 1VQ8_W_9 | W: 50s ribosomal protein l30p, Haloarcula marismortui (natural) 9: 5s ribosomal RNA, Haloarcula marismortui (natural) | P14121 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | ✔ |
Interologs
Total number of interologs for this interface: 3
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1VQ8_W_9 | 1YHQ_W_9 | 0.99 | 1.0 | 0.11 | 1.0 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |
1VQ8_W_9 | 6AZ3_c_8 | 0.72 | 0.85 | 1.01 | 0.09 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |
1VQ8_W_9 | 7O7Y_BF_B7 | 0.74 | 0.85 | 1.15 | 0.18 | Ribosomal protein L30p/L7e | 5S ribosomal RNA | compare |