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All interfaces > All interologs > Interface groups > group57 > 6AZ3_c_8

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_c
6AZ3_8
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
c:106 [ASN] 8:84 [G] 4.73 8:96 [C] 49.1
c:138 [ARG] 8:98 [C] 3.58 8:82 [G] 62.1
c:138 [ARG] 8:99 [G] 2.91 8:81 [U] 62.1
c:141 [GLU] 8:98 [C] 2.88 8:82 [G] sugar:SC, sugar:SC 68.7
c:142 [PRO] 8:83 [A] 3.89 8:97 [U] 80.3
c:142 [PRO] 8:84 [G] 3.8 8:96 [C] 80.3
c:226 [GLN] 8:87 [C] 4.75 8:94 [G] 36.9
c:228 [ARG] 8:84 [G] 3.18 8:96 [C] sugar:BB 37.2
c:228 [ARG] 8:85 [G] 3.39 8:95 [A] sugar:SC 37.2
c:228 [ARG] 8:86 [U] 2.72 37.2
c:228 [ARG] 8:87 [C] 2.84 8:94 [G] 37.2
c:229 [ARG] 8:84 [G] 4.64 8:96 [C] 34.0
c:229 [ARG] 8:85 [G] 3.17 8:95 [A] base:SC 34.0
c:229 [ARG] 8:87 [C] 3.71 8:94 [G] sugar:SC 34.0
c:229 [ARG] 8:96 [C] 4.65 8:84 [G] 34.0
c:230 [HIS] 8:97 [U] 3.3 8:83 [A] 54.5
c:230 [HIS] 8:98 [C] 3.67 8:82 [G] 54.5
c:232 [VAL] 8:97 [U] 3.93 8:83 [A] 19.5
c:232 [VAL] 8:98 [C] 4.0 8:82 [G] 19.5
c:233 [GLU] 8:84 [G] 2.61 8:96 [C] base:SC 58.4
c:233 [GLU] 8:85 [G] 4.61 8:95 [A] 58.4
c:233 [GLU] 8:96 [C] 3.77 8:84 [G] 58.4
c:233 [GLU] 8:97 [U] 3.25 8:83 [A] 58.4
c:237 [TYR] 8:84 [G] 3.24 8:96 [C] sugar:SC 25.3

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group57 6AZ3_c_8 c: 60s ribosomal protein l7 family protein, Leishmania donovani (natural) 8: rRNA 5s, Leishmania donovani (natural) A0A504XVT8 Ribosomal protein L30p/L7e 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_W_9 6AZ3_c_8 0.72 0.85 1.04 0.09 Ribosomal protein L30p/L7e 5S ribosomal RNA compare
1VQ8_W_9 6AZ3_c_8 0.72 0.85 1.01 0.09 Ribosomal protein L30p/L7e 5S ribosomal RNA compare
6AZ3_c_8 7O7Y_BF_B7 0.90 0.95 0.44 0.44 Ribosomal protein L30p/L7e 5S ribosomal RNA compare