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All interfaces > All interologs > Interface groups > group57 > 7O7Y_BF_B7

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

7O7Y_BF
7O7Y_B7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BF:95 [ARG] B7:82 [G] 4.54 B7:94 [C] 79.14
BF:95 [ARG] B7:83 [A] 4.08 B7:93 [G] 79.14
BF:133 [ARG] B7:96 [U] 3.86 B7:80 [U] 45.81
BF:133 [ARG] B7:97 [G] 3.53 B7:79 [U] 45.81
BF:134 [ILE] B7:81 [G] 4.93 B7:95 [C] 9.16
BF:136 [GLU] B7:96 [U] 2.76 B7:80 [U] sugar:SC 69.49
BF:137 [PRO] B7:81 [G] 3.99 B7:95 [C] 81.94
BF:137 [PRO] B7:82 [G] 3.77 B7:94 [C] 81.94
BF:221 [LYS] B7:83 [A] 4.66 B7:93 [G] 52.64
BF:221 [LYS] B7:84 [U] 3.8 52.64
BF:221 [LYS] B7:85 [G] 3.56 B7:92 [C] 52.64
BF:223 [THR] B7:82 [G] 3.12 B7:94 [C] sugar:BB 37.33
BF:223 [THR] B7:83 [A] 3.18 B7:93 [G] 37.33
BF:223 [THR] B7:84 [U] 4.34 37.33
BF:223 [THR] B7:85 [G] 4.95 B7:92 [C] 37.33
BF:224 [THR] B7:82 [G] 4.77 B7:94 [C] 42.69
BF:224 [THR] B7:83 [A] 3.61 B7:93 [G] 42.69
BF:224 [THR] B7:85 [G] 4.99 B7:92 [C] 42.69
BF:225 [HIS] B7:95 [C] 3.29 B7:81 [G] 43.1
BF:225 [HIS] B7:96 [U] 3.81 B7:80 [U] 43.1
BF:227 [VAL] B7:95 [C] 3.15 B7:81 [G] 27.5
BF:227 [VAL] B7:96 [U] 3.86 B7:80 [U] 27.5
BF:228 [GLU] B7:82 [G] 2.89 B7:94 [C] base:SC 49.62
BF:228 [GLU] B7:83 [A] 4.69 B7:93 [G] 49.62
BF:228 [GLU] B7:94 [C] 3.89 B7:82 [G] 49.62
BF:228 [GLU] B7:95 [C] 3.28 B7:81 [G] 49.62

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group57 7O7Y_BF_B7 BF: Ribosomal protein ul30, Oryctolagus cuniculus (natural) B7: 5s rRNA, Oryctolagus cuniculus (natural) Ribosomal protein L30p/L7e 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_c_8 7O7Y_BF_B7 0.90 0.95 0.44 0.44 Ribosomal protein L30p/L7e 5S ribosomal RNA compare
1YHQ_W_9 7O7Y_BF_B7 0.74 0.85 1.14 0.18 Ribosomal protein L30p/L7e 5S ribosomal RNA compare
1VQ8_W_9 7O7Y_BF_B7 0.74 0.85 1.15 0.18 Ribosomal protein L30p/L7e 5S ribosomal RNA compare