RNAprotDB

All interfaces > All interologs > Interface groups > group72 > 6AZ3_S_1

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_S
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
S:12 [ARG] 1:1099 [A] 3.44 96.8
S:12 [ARG] 1:1100 [C] 3.12 1:1050 [G] 96.8
S:12 [ARG] 1:1101 [U] 3.65 1:1049 [A] 96.8
S:13 [HIS] 1:1045 [G] 3.19 28.3
S:13 [HIS] 1:1046 [U] 4.23 1:1105 [A] 28.3
S:13 [HIS] 1:1101 [U] 3.59 1:1049 [A] 28.3
S:14 [LEU] 1:1044 [G] 3.83 1:1107 [OMU] 49.7
S:14 [LEU] 1:1045 [G] 3.68 49.7
S:18 [LYS] 1:1045 [G] 4.22 0.0
S:18 [LYS] 1:1103 [U] 3.87 1:1048 [A] 0.0
S:19 [PHE] 1:1102 [U] 3.5 56.3
S:19 [PHE] 1:1103 [U] 4.1 1:1048 [A] 56.3
S:35 [LYS] 1:1138 [A] 3.57 1:1127 [U] 57.1
S:35 [LYS] 1:1139 [A] 4.13 1:1126 [U] 57.1
S:36 [VAL] 1:1139 [A] 3.92 1:1126 [U] 37.4
S:39 [TYR] 1:1111 [C] 3.75 1:1040 [G] 46.8
S:39 [TYR] 1:1112 [A] 3.33 1:1039 [U] 46.8
S:41 [ASP] 1:1042 [G] 2.34 1:1109 [U] sugar:SC, sugar:SC 77.5
S:41 [ASP] 1:1110 [G] 4.7 1:1041 [U] 77.5
S:43 [VAL] 1:1042 [G] 4.54 1:1109 [U] 27.6
S:43 [VAL] 1:1043 [C] 3.81 1:1108 [G] 27.6
S:58 [HIS] 1:1043 [C] 3.16 1:1108 [G] sugar:SC 91.5
S:58 [HIS] 1:1044 [G] 3.74 1:1107 [OMU] 91.5
S:59 [GLY] 1:1042 [G] 2.95 1:1109 [U] base:BB 98.5
S:59 [GLY] 1:1043 [C] 3.35 1:1108 [G] 98.5
S:59 [GLY] 1:1110 [G] 4.2 1:1041 [U] 98.5
S:60 [ARG] 1:1042 [G] 4.68 1:1109 [U] 73.8
S:60 [ARG] 1:1109 [U] 3.38 1:1042 [G] 73.8
S:60 [ARG] 1:1110 [G] 3.48 1:1041 [U] 73.8
S:61 [THR] 1:1110 [G] 3.3 1:1041 [U] sugar:BB 92.6
S:61 [THR] 1:1111 [C] 3.27 1:1040 [G] 92.6
S:77 [ASN] 1:1111 [C] 3.19 1:1040 [G] 67.5
S:81 [ARG] 1:1005 [U] 4.22 1:1018 [A] 62.0
S:81 [ARG] 1:1006 [U] 4.0 1:1017 [U] 62.0
S:81 [ARG] 1:1018 [A] 3.08 1:1005 [U] 62.0
S:81 [ARG] 1:1019 [G] 3.61 1:1171 [U] 62.0
S:82 [THR] 1:1019 [G] 3.63 1:1171 [U] 62.0
S:82 [THR] 1:1020 [C] 3.68 1:1170 [G] 62.0
S:97 [ARG] 1:1042 [G] 4.58 1:1109 [U] 67.7
S:97 [ARG] 1:1043 [C] 3.58 1:1108 [G] 67.7
S:99 [SER] 1:1041 [U] 4.87 1:1110 [G] 88.3
S:99 [SER] 1:1110 [G] 4.76 1:1041 [U] 88.3
S:100 [ARG] 1:1040 [G] 4.66 1:1111 [C] 44.5
S:100 [ARG] 1:1041 [U] 3.18 1:1110 [G] sugar:BB 44.5
S:100 [ARG] 1:1042 [G] 3.02 1:1109 [U] 44.5
S:101 [CYS] 1:1040 [G] 3.04 1:1111 [C] base:BB 61.2
S:101 [CYS] 1:1041 [U] 3.88 1:1110 [G] 61.2
S:101 [CYS] 1:1110 [G] 4.81 1:1041 [U] 61.2
S:101 [CYS] 1:1111 [C] 3.44 1:1040 [G] 61.2
S:101 [CYS] 1:1112 [A] 3.94 1:1039 [U] 61.2
S:102 [GLN] 1:1040 [G] 4.86 1:1111 [C] 51.4
S:102 [GLN] 1:1112 [A] 3.24 1:1039 [U] 51.4
S:103 [GLU] 1:1040 [G] 4.45 1:1111 [C] 39.0
S:103 [GLU] 1:1041 [U] 3.43 1:1110 [G] 39.0
S:104 [ALA] 1:1040 [G] 3.31 1:1111 [C] 41.4
S:105 [PHE] 1:1112 [A] 4.11 1:1039 [U] 57.0
S:105 [PHE] 1:1113 [A] 3.59 1:1038 [U] 57.0
S:105 [PHE] 1:1114 [A] 3.55 57.0
S:105 [PHE] 1:1118 [A] 4.83 1:1146 [A] 57.0
S:106 [LYS] 1:1118 [A] 3.71 1:1146 [A] 29.2
S:108 [LYS] 1:1113 [A] 4.94 1:1038 [U] 87.9
S:108 [LYS] 1:1114 [A] 3.09 base:SC 87.9
S:108 [LYS] 1:1148 [A] 3.74 base:BB 87.9
S:108 [LYS] 1:1150 [A] 2.86 sugar:SC 87.9
S:108 [LYS] 1:1151 [A] 4.53 87.9
S:109 [GLU] 1:1114 [A] 2.93 base:SC 63.7
S:109 [GLU] 1:1118 [A] 3.92 1:1146 [A] 63.7
S:109 [GLU] 1:1119 [C] 4.31 1:1145 [G] 63.7
S:110 [HIS] 1:1119 [C] 4.92 1:1145 [G] 46.9
S:111 [GLN] 1:1148 [A] 3.01 base:SC 1.1
S:111 [GLN] 1:1151 [A] 3.18 base/AA stacks 1.1
S:112 [PHE] 1:1114 [A] 3.72 74.6
S:112 [PHE] 1:1147 [A] 3.85 74.6
S:112 [PHE] 1:1148 [A] 3.46 74.6
S:112 [PHE] 1:1150 [A] 3.47 74.6
S:113 [GLN] 1:1119 [C] 3.59 1:1145 [G] 42.2
S:115 [TYR] 1:1148 [A] 3.45 0.0
S:116 [LEU] 1:1146 [A] 3.47 1:1118 [A] 48.8
S:116 [LEU] 1:1147 [A] 3.68 48.8
S:128 [LEU] 1:1152 [A] 3.39 23.6
S:129 [LYS] 1:1152 [A] 3.07 sugar:BB 73.2
S:129 [LYS] 1:1153 [A] 3.32 73.2
S:130 [LYS] 1:1153 [A] 4.31 1.4
S:131 [SER] 1:1153 [A] 3.69 48.3
S:131 [SER] 1:1154 [G] 3.14 48.3
S:132 [SER] 1:1153 [A] 4.56 85.1
S:132 [SER] 1:1154 [G] 3.8 85.1
S:133 [ARG] 1:1154 [G] 3.14 68.7
S:137 [ILE] 1:598 [G] 3.68 23.7
S:137 [ILE] 1:599 [G] 4.0 23.7
S:139 [ARG] 1:598 [G] 4.05 39.6
S:139 [ARG] 1:599 [G] 2.79 39.6

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group72 6AZ3_S_1 S: 60s ribosomal protein l21, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A3Q8ICH0 SH3 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_S_1 7O7Y_BT_B5 0.69 0.92 1.39 0.26 SH3 Eukaryotic large subunit ribosomal RNA compare