Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Interface
show interface as licoriceCommon contacts -
6AZ3_S
|
6AZ3_1
|
7O7Y_BT
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
S:77 [ASN] | 1:1111 [C] | BT:77 [ASN] | B5:1739 [U] | ✔ |
S:104 [ALA] | 1:1040 [G] | BT:104 [SER] | B5:1668 [A] | ✔ |
S:60 [ARG] | 1:1109 [U] | BT:60 [LYS] | B5:1737 [G] | ✔ |
S:60 [ARG] | 1:1110 [G] | BT:60 [LYS] | B5:1738 [G] | ✔ |
S:101 [CYS] | 1:1040 [G] | BT:101 [SER] | B5:1668 [A] | ✔ |
S:101 [CYS] | 1:1041 [U] | BT:101 [SER] | B5:1669 [U] | ✔ |
S:101 [CYS] | 1:1110 [G] | BT:101 [SER] | B5:1738 [G] | ✔ |
S:101 [CYS] | 1:1111 [C] | BT:101 [SER] | B5:1739 [U] | ✔ |
S:101 [CYS] | 1:1112 [A] | BT:101 [SER] | B5:1740 [A] | ✔ |
S:41 [ASP] | 1:1042 [G] | BT:41 [ASP] | B5:1670 [C] | ✔ |
S:41 [ASP] | 1:1110 [G] | BT:41 [ASP] | B5:1738 [G] | ✔ |
S:14 [LEU] | 1:1044 [G] | BT:14 [MET] | B5:1672 [G] | ✔ |
S:14 [LEU] | 1:1045 [G] | BT:14 [MET] | B5:1673 [G] | ✔ |
S:35 [LYS] | 1:1138 [A] | BT:35 [LYS] | B5:1763 [G] | ✔ |
S:35 [LYS] | 1:1139 [A] | BT:35 [LYS] | B5:1764 [A] | ✔ |
S:59 [GLY] | 1:1042 [G] | BT:59 [GLY] | B5:1670 [C] | ✔ |
S:59 [GLY] | 1:1043 [C] | BT:59 [GLY] | B5:1671 [C] | ✔ |
S:59 [GLY] | 1:1110 [G] | BT:59 [GLY] | B5:1738 [G] | ✔ |
S:99 [SER] | 1:1041 [U] | BT:99 [SER] | B5:1669 [U] | ✔ |
S:99 [SER] | 1:1110 [G] | BT:99 [SER] | B5:1738 [G] | ✔ |
S:97 [ARG] | 1:1042 [G] | BT:97 [LYS] | B5:1670 [C] | ✔ |
S:97 [ARG] | 1:1043 [C] | BT:97 [LYS] | B5:1671 [C] | ✔ |
S:36 [VAL] | 1:1139 [A] | BT:36 [LYS] | B5:1764 [A] | ✔ |
S:139 [ARG] | 1:599 [G] | BT:142 [ARG] | B5:1005 [G] | ✔ |
S:81 [ARG] | 1:1006 [U] | BT:81 [LYS] | B5:1627 [U] | ✔ |
S:43 [VAL] | 1:1043 [C] | BT:43 [LYS] | B5:1671 [C] | ✔ |
S:108 [LYS] | 1:1113 [A] | BT:108 [ARG] | B5:1741 [A] | ✔ |
S:108 [LYS] | 1:1114 [A] | BT:108 [ARG] | B5:1742 [G] | ✔ |
S:108 [LYS] | 1:1150 [A] | BT:108 [ARG] | B5:1775 [G] | ✔ |
S:113 [GLN] | 1:1119 [C] | BT:113 [ASP] | B5:1746 [C] | ✔ |
S:100 [ARG] | 1:1040 [G] | BT:100 [LYS] | B5:1668 [A] | ✔ |
S:100 [ARG] | 1:1041 [U] | BT:100 [LYS] | B5:1669 [U] | ✔ |
S:100 [ARG] | 1:1042 [G] | BT:100 [LYS] | B5:1670 [C] | ✔ |
S:102 [GLN] | 1:1112 [A] | BT:102 [ARG] | B5:1740 [A] | ✔ |
S:39 [TYR] | 1:1111 [C] | BT:39 [ILE] | B5:1739 [U] | ✔ |
S:58 [HIS] | 1:1043 [C] | BT:58 [HIS] | B5:1671 [C] | ✔ |
S:58 [HIS] | 1:1044 [G] | BT:58 [HIS] | B5:1672 [G] | ✔ |
S:137 [ILE] | 1:598 [G] | BT:140 [PHE] | B5:1004 [G] | ✔ |
S:115 [TYR] | 1:1148 [A] | BT:115 [LYS] | B5:1773 [U] | ✔ |
S:13 [HIS] | 1:1045 [G] | BT:13 [TYR] | B5:1673 [G] | ✔ |
S:13 [HIS] | 1:1046 [U] | BT:13 [TYR] | B5:1674 [U] | ✔ |
S:13 [HIS] | 1:1101 [U] | BT:13 [TYR] | B5:1729 [U] | ✔ |
S:109 [GLU] | 1:1114 [A] | BT:109 [VAL] | B5:1742 [G] | ✔ |
S:109 [GLU] | 1:1119 [C] | BT:109 [VAL] | B5:1746 [C] | ✔ |
S:61 [THR] | 1:1110 [G] | BT:61 [THR] | B5:1738 [G] | ✔ |
S:61 [THR] | 1:1111 [C] | BT:61 [THR] | B5:1739 [U] | ✔ |
S:12 [ARG] | 1:1099 [A] | BT:12 [ARG] | B5:1727 [A] | ✔ |
S:12 [ARG] | 1:1100 [C] | BT:12 [ARG] | B5:1728 [C] | ✔ |
S:12 [ARG] | 1:1101 [U] | BT:12 [ARG] | B5:1729 [U] | ✔ |
S:19 [PHE] | 1:1102 [U] | BT:19 [PHE] | B5:1730 [U] | ✔ |
S:19 [PHE] | 1:1103 [U] | BT:19 [PHE] | B5:1731 [PSU] | ✔ |
S:105 [PHE] | 1:1112 [A] | BT:105 [PHE] | B5:1740 [A] | ✔ |
S:105 [PHE] | 1:1113 [A] | BT:105 [PHE] | B5:1741 [A] | ✔ |
S:105 [PHE] | 1:1114 [A] | BT:105 [PHE] | B5:1742 [G] | ✔ |
S:105 [PHE] | 1:1118 [A] | BT:105 [PHE] | B5:1745 [G] | ✔ |
S:112 [PHE] | 1:1114 [A] | BT:112 [ASN] | B5:1742 [G] | ✔ |
S:112 [PHE] | 1:1150 [A] | BT:112 [ASN] | B5:1775 [G] | ✔ |
S:60 [ARG] | 1:1042 [G] | BT:60 [LYS] | B5:1670 [C] | ❌ 7O7Y_BT_B5 |
S:139 [ARG] | 1:598 [G] | BT:142 [ARG] | B5:1004 [G] | ❌ 7O7Y_BT_B5 |
S:43 [VAL] | 1:1042 [G] | BT:43 [LYS] | B5:1670 [C] | ❌ 7O7Y_BT_B5 |
S:116 [LEU] | 1:1146 [A] | BT:116 [LYS] | B5:1771 [C] | ❌ 7O7Y_BT_B5 |
S:116 [LEU] | 1:1147 [A] | BT:116 [LYS] | B5:1772 [G] | ❌ 7O7Y_BT_B5 |
S:108 [LYS] | 1:1148 [A] | BT:108 [ARG] | B5:1773 [U] | ❌ 7O7Y_BT_B5 |
S:102 [GLN] | 1:1040 [G] | BT:102 [ARG] | B5:1668 [A] | ❌ 7O7Y_BT_B5 |
S:39 [TYR] | 1:1112 [A] | BT:39 [ILE] | B5:1740 [A] | ❌ 7O7Y_BT_B5 |
S:137 [ILE] | 1:599 [G] | BT:140 [PHE] | B5:1005 [G] | ❌ 7O7Y_BT_B5 |
S:109 [GLU] | 1:1118 [A] | BT:109 [VAL] | B5:1745 [G] | ❌ 7O7Y_BT_B5 |
S:112 [PHE] | 1:1147 [A] | BT:112 [ASN] | B5:1772 [G] | ❌ 7O7Y_BT_B5 |
S:112 [PHE] | 1:1148 [A] | BT:112 [ASN] | B5:1773 [U] | ❌ 7O7Y_BT_B5 |
S:102 [GLN] | 1:1113 [A] | BT:102 [ARG] | B5:1741 [A] | ❌ 6AZ3_S_1 |
S:102 [GLN] | 1:1119 [C] | BT:102 [ARG] | B5:1746 [C] | ❌ 6AZ3_S_1 |
S:102 [GLN] | 1:1118 [A] | BT:102 [ARG] | B5:1745 [G] | ❌ 6AZ3_S_1 |
S:105 [PHE] | 1:1150 [A] | BT:105 [PHE] | B5:1775 [G] | ❌ 6AZ3_S_1 |
S:113 [GLN] | 1:1114 [A] | BT:113 [ASP] | B5:1742 [G] | ❌ 6AZ3_S_1 |
S:116 [LEU] | 1:1150 [A] | BT:116 [LYS] | B5:1775 [G] | ❌ 6AZ3_S_1 |
S:116 [LEU] | 1:1148 [A] | BT:116 [LYS] | B5:1773 [U] | ❌ 6AZ3_S_1 |
S:13 [HIS] | 1:1100 [C] | BT:13 [TYR] | B5:1728 [C] | ❌ 6AZ3_S_1 |
S:41 [ASP] | 1:1041 [U] | BT:41 [ASP] | B5:1669 [U] | ❌ 6AZ3_S_1 |
S:43 [VAL] | 1:1044 [G] | BT:43 [LYS] | B5:1672 [G] | ❌ 6AZ3_S_1 |
S:59 [GLY] | 1:1109 [U] | BT:59 [GLY] | B5:1737 [G] | ❌ 6AZ3_S_1 |
S:77 [ASN] | 1:1110 [G] | BT:77 [ASN] | B5:1738 [G] | ❌ 6AZ3_S_1 |
S:99 [SER] | 1:1111 [C] | BT:99 [SER] | B5:1739 [U] | ❌ 6AZ3_S_1 |
S:81 [ARG] | 1:1005 [U] | BT:81 [LYS] | B5:1626 [U] | ❌ 7O7Y_B5:1626 no longer at interface |
S:81 [ARG] | 1:1018 [A] | BT:81 [LYS] | B5:1639 [A] | ❌ 7O7Y_B5:1639 no longer at interface |
S:81 [ARG] | 1:1019 [G] | BT:81 [LYS] | B5:1640 [G] | ❌ 7O7Y_B5:1640 no longer at interface |
S:82 [THR] | 1:1019 [G] | BT:82 [GLY] | B5:1640 [G] | ❌ 7O7Y_BT:82, 7O7Y_B5:1640 no longer at interface |
S:82 [THR] | 1:1020 [C] | BT:82 [GLY] | B5:1641 [C] | ❌ 7O7Y_BT:82, 7O7Y_B5:1641 no longer at interface |
S:108 [LYS] | 1:1155 [A] | BT:108 [ARG] | B5:1776 [A] | ❌ 6AZ3_1:1155 no longer at interface |
S:137 [ILE] | 1:597 [C] | BT:140 [PHE] | B5:1003 [C] | ❌ 6AZ3_1:597 no longer at interface |
S:139 [ARG] | 1:600 [C] | BT:142 [ARG] | B5:1006 [C] | ❌ 6AZ3_1:600 no longer at interface |
S:36 [VAL] | 1:1140 [G] | BT:36 [LYS] | B5:1765 [G] | ❌ 6AZ3_1:1140 no longer at interface |
S:110 [HIS] | 1:1119 [C] | BT:110 [LYS] | B5:1746 [C] | ❌ 7O7Y_BT:110 no longer at interface |
S:106 [LYS] | 1:1118 [A] | BT:106 [LEU] | B5:1745 [G] | ❌ 7O7Y_BT:106 no longer at interface |
S:111 [GLN] | 1:1148 [A] | BT:111 [GLU] | B5:1773 [U] | ❌ 7O7Y_BT:111 no longer at interface |
S:18 [LYS] | 1:1045 [G] | BT:18 [PRO] | B5:1673 [G] | ❌ 7O7Y_BT:18 no longer at interface |
S:18 [LYS] | 1:1103 [U] | BT:18 [PRO] | B5:1731 [PSU] | ❌ 7O7Y_BT:18 no longer at interface |
S:103 [GLU] | 1:1040 [G] | BT:103 [ASP] | B5:1668 [A] | ❌ 7O7Y_BT:103 no longer at interface |
S:103 [GLU] | 1:1041 [U] | BT:103 [ASP] | B5:1669 [U] | ❌ 7O7Y_BT:103 no longer at interface |
S:10 [GLY] | 1:1045 [G] | BT:10 [GLY] | B5:1673 [G] | ❌ 6AZ3_S:10 no longer at interface |
S:119 [LYS] | 1:1148 [A] | BT:119 [ALA] | B5:1773 [U] | ❌ 6AZ3_S:119 no longer at interface |
S:120 [LYS] | 1:1147 [A] | BT:120 [LYS] | B5:1772 [G] | ❌ 6AZ3_S:120 no longer at interface |
S:120 [LYS] | 1:1148 [A] | BT:120 [LYS] | B5:1773 [U] | ❌ 6AZ3_S:120 no longer at interface |
S:120 [LYS] | 1:1146 [A] | BT:120 [LYS] | B5:1771 [C] | ❌ 6AZ3_S:120 no longer at interface |
S:42 [VAL] | 1:1043 [C] | BT:42 [ILE] | B5:1671 [C] | ❌ 6AZ3_S:42 no longer at interface |
S:79 [PRO] | 1:1110 [G] | BT:79 [GLN] | B5:1738 [G] | ❌ 6AZ3_S:79 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
SH3 | Eukaryotic large subunit ribosomal RNA | 0.92 | 1.39 | 0.26 | 0.86 | 0.91 | 0.71 | 0.78 | 0.69 | 0.67 | 0.34 | 0.48 |
Other pairs involving 6AZ3_S_1 or 7O7Y_BT_B5
Total number of entries: 4
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1VQ8_Q_0 | 7O7Y_BT_B5 | 0.67 | 0.94 | 1.91 | 0.22 | SH3 | compare | |
6AZ3_S_1 | 7O7Y_BT_B5 | 0.69 | 0.92 | 1.39 | 0.26 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |
6AZ3_S_2 | 7O7Y_BT_B5 | 0.79 | 0.91 | 1.52 | 0.42 | SH3 | Eukaryotic large subunit ribosomal RNA | compare |
1YHQ_Q_0 | 7O7Y_BT_B5 | 0.67 | 0.94 | 1.87 | 0.23 | SH3 | compare |