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All interfaces > All interologs > Interface groups > group103 > 4Y4O_1n_1a

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

4Y4O_1n
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1n:2 [ALA] 1a:983 [A] 3.64 78.42
1n:2 [ALA] 1a:1048 [G] 3.58 1a:1209 [C] 78.42
1n:2 [ALA] 1a:1049 [U] 3.62 sugar:BB 78.42
1n:2 [ALA] 1a:1050 [G] 4.34 1a:1208 [C] 78.42
1n:2 [ALA] 1a:1215 [G] 4.7 1a:990 [C] 78.42
1n:2 [ALA] 1a:1216 [G] 3.02 1a:989 [C] 78.42
1n:3 [ARG] 1a:1048 [G] 3.47 1a:1209 [C] 43.35
1n:3 [ARG] 1a:1049 [U] 3.26 base:SC 43.35
1n:3 [ARG] 1a:1202 [G] 2.93 43.35
1n:3 [ARG] 1a:1203 [C] 3.28 1a:1057 [G] 43.35
1n:3 [ARG] 1a:1216 [G] 4.14 1a:989 [C] 43.35
1n:4 [LYS] 1a:994 [A] 4.15 10.49
1n:4 [LYS] 1a:995 [C] 3.6 1a:1046 [A] base:SC 10.49
1n:4 [LYS] 1a:996 [A] 4.54 10.49
1n:4 [LYS] 1a:1046 [A] 4.81 1a:995 [C] 10.49
1n:4 [LYS] 1a:1047 [G] 3.22 1a:1210 [C] 10.49
1n:4 [LYS] 1a:1048 [G] 2.94 1a:1209 [C] 10.49
1n:5 [ALA] 1a:994 [A] 3.5 36.24
1n:5 [ALA] 1a:1047 [G] 4.91 1a:1210 [C] 36.24
1n:5 [ALA] 1a:1048 [G] 4.97 1a:1209 [C] 36.24
1n:5 [ALA] 1a:1216 [G] 3.39 1a:989 [C] 36.24
1n:5 [ALA] 1a:1217 [C] 3.79 1a:988 [G] 36.24
1n:6 [LEU] 1a:981 [U] 4.44 6.68
1n:6 [LEU] 1a:982 [U] 3.69 1a:1222 [G] 6.68
1n:6 [LEU] 1a:983 [A] 3.71 6.68
1n:6 [LEU] 1a:1217 [C] 4.04 1a:988 [G] 6.68
1n:8 [GLU] 1a:994 [A] 3.44 35.72
1n:8 [GLU] 1a:995 [C] 3.26 1a:1046 [A] 35.72
1n:9 [LYS] 1a:980 [C] 4.74 67.93
1n:9 [LYS] 1a:981 [U] 3.06 67.93
1n:9 [LYS] 1a:994 [A] 4.84 67.93
1n:9 [LYS] 1a:1217 [C] 3.01 1a:988 [G] 67.93
1n:9 [LYS] 1a:1218 [C] 2.96 1a:987 [G] 67.93
1n:12 [ARG] 1a:1217 [C] 3.34 1a:988 [G] 38.78
1n:12 [ARG] 1a:1218 [C] 3.26 1a:987 [G] 38.78
1n:15 [LYS] 1a:1015 [A] 2.8 71.02
1n:15 [LYS] 1a:1016 [A] 2.93 1a:1013 [G] 71.02
1n:15 [LYS] 1a:1218 [C] 4.39 1a:987 [G] 71.02
1n:15 [LYS] 1a:1219 [U] 4.22 1a:986 [A] 71.02
1n:16 [PHE] 1a:1219 [U] 4.54 1a:986 [A] 56.78
1n:16 [PHE] 1a:1317 [C] 3.78 base/AA stacks 56.78
1n:17 [LYS] 1a:1257 [U] 3.34 12.16
1n:17 [LYS] 1a:1316 [G] 3.22 12.16
1n:17 [LYS] 1a:1317 [C] 3.28 12.16
1n:18 [VAL] 1a:979 [C] 3.53 66.77
1n:18 [VAL] 1a:980 [C] 3.96 66.77
1n:18 [VAL] 1a:1316 [G] 3.31 66.77
1n:18 [VAL] 1a:1317 [C] 3.6 66.77
1n:18 [VAL] 1a:1318 [A] 4.39 66.77
1n:18 [VAL] 1a:1360 [A] 3.65 1a:978 [A] 66.77
1n:19 [ARG] 1a:979 [C] 2.73 base:SC 74.43
1n:19 [ARG] 1a:980 [C] 2.88 sugar:BB 74.43
1n:19 [ARG] 1a:1218 [C] 4.39 1a:987 [G] 74.43
1n:19 [ARG] 1a:1219 [U] 2.77 1a:986 [A] 74.43
1n:19 [ARG] 1a:1220 [G] 4.62 1a:985 [C] 74.43
1n:19 [ARG] 1a:1317 [C] 3.37 base:SC 74.43
1n:20 [ALA] 1a:980 [C] 4.41 45.97
1n:20 [ALA] 1a:1360 [A] 4.79 1a:978 [A] 45.97
1n:21 [TYR] 1a:980 [C] 3.77 45.51
1n:21 [TYR] 1a:981 [U] 3.51 45.51
1n:22 [THR] 1a:1358 [U] 4.67 1a:1363 [A] 81.46
1n:22 [THR] 1a:1359 [C] 3.08 81.46
1n:23 [ARG] 1a:981 [U] 3.53 88.96
1n:23 [ARG] 1a:982 [U] 2.81 1a:1222 [G] 88.96
1n:26 [ARG] 1a:1202 [G] 4.25 18.41
1n:27 [CYS] 1a:1202 [G] 3.05 88.28
1n:27 [CYS] 1a:1203 [C] 3.57 1a:1057 [G] 88.28
1n:28 [GLY] 1a:1202 [G] 5.0 84.5
1n:29 [ARG] 1a:973 [G] 3.71 1a:962 [C] sugar:SC 90.83
1n:29 [ARG] 1a:974 [A] 2.26 90.83
1n:29 [ARG] 1a:1202 [G] 2.81 sugar:SC 90.83
1n:30 [ALA] 1a:981 [U] 3.86 60.84
1n:30 [ALA] 1a:982 [U] 4.03 1a:1222 [G] 60.84
1n:31 [ARG] 1a:974 [A] 3.24 base/AA stacks 85.05
1n:31 [ARG] 1a:976 [G] 3.53 85.05
1n:31 [ARG] 1a:977 [A] 3.65 85.05
1n:31 [ARG] 1a:982 [U] 4.58 1a:1222 [G] 85.05
1n:32 [SER] 1a:974 [A] 3.24 66.05
1n:32 [SER] 1a:975 [A] 2.58 sugar:SC 66.05
1n:32 [SER] 1a:976 [G] 2.48 66.05
1n:33 [VAL] 1a:976 [G] 4.43 82.06
1n:33 [VAL] 1a:1358 [U] 3.49 1a:1363 [A] 82.06
1n:33 [VAL] 1a:1359 [C] 3.92 82.06
1n:34 [TYR] 1a:975 [A] 3.76 33.71
1n:34 [TYR] 1a:1357 [A] 3.27 1a:1365 [G] 33.71
1n:34 [TYR] 1a:1358 [U] 3.47 1a:1363 [A] 33.71
1n:35 [ARG] 1a:1358 [U] 2.73 1a:1363 [A] 70.8
1n:35 [ARG] 1a:1359 [C] 3.37 base/AA stacks 70.8
1n:35 [ARG] 1a:1360 [A] 2.29 1a:978 [A] 70.8
1n:36 [PHE] 1a:1358 [U] 4.42 1a:1363 [A] 1.02
1n:41 [ARG] 1a:973 [G] 3.41 1a:962 [C] 99.0
1n:41 [ARG] 1a:974 [A] 2.65 99.0
1n:42 [ILE] 1a:1202 [G] 3.36 71.2
1n:43 [CYS] 1a:1202 [G] 3.72 44.53
1n:45 [ARG] 1a:1059 [C] 3.03 1a:1198 [G] sugar:SC 94.96
1n:45 [ARG] 1a:1060 [C] 2.78 1a:1197 [G] 94.96
1n:46 [GLU] 1a:1058 [G] 4.88 1a:1199 [U] 51.28
1n:46 [GLU] 1a:1202 [G] 2.8 base:SC, base:SC, base:SC 51.28
1n:58 [LYS] 1a:1188 [A] 3.29 85.11
1n:58 [LYS] 1a:1189 [C] 2.87 85.11
1n:59 [ALA] 1a:1188 [A] 4.82 81.21
1n:60 [SER] 1a:1114 [C] 2.37 1a:1186 [G] sugar:BB 90.83
1n:60 [SER] 1a:1115 [C] 4.0 1a:1185 [G] 90.83
1n:60 [SER] 1a:1186 [G] 4.97 1a:1114 [C] 90.83
1n:60 [SER] 1a:1187 [G] 2.61 1a:1113 [C] base:SC, base:SC 90.83
1n:60 [SER] 1a:1188 [A] 3.18 90.83
1n:61 [TRP] 1a:1114 [C] 3.65 1a:1186 [G] 77.01
1n:61 [TRP] 1a:1115 [C] 3.43 1a:1185 [G] 77.01
1n:61 [TRP] 1a:1186 [G] 2.51 1a:1114 [C] base:BB 77.01
1n:61 [TRP] 1a:1187 [G] 3.27 1a:1113 [C] sugar:SC 77.01
1n:61 [TRP] 1a:1368 [G] 3.67 1a:1354 [C] 77.01
1n:61 [TRP] 1a:1369 [C] 2.85 1a:1353 [G] 77.01

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group103 4Y4O_1n_1a 1n: 30s ribosomal protein s14 type z, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) P0DOY6 LIM domain-like Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1n_1a 7K00_N_A 0.85 0.98 1.53 0.35 LIM domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1n_1a 7PJS_n_a 0.83 0.98 1.63 0.32 LIM domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1n_1a 7O7Y_AG_A2 0.60 0.92 2.46 0.19 LIM domain-like compare
4Y4O_1n_1a 7RYG_n_a 0.42 0.9 5.09 0.22 LIM domain-like Bacterial small subunit ribosomal RNA compare
4Y4O_1n_1a 6S0X_n_a 0.32 0.95 3.28 0.38 LIM domain-like Bacterial small subunit ribosomal RNA compare