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All interfaces > All interologs > Interface groups > group141 > 1URN_A_P vs 6DCL_A_D

Interface analysis


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Common contacts -

1URN_A
1URN_P
6DCL_A
6DCL_D
Conserved?
A:13 [TYR] P:9 [G] A:108 [PHE] D:9 [A] ✔
A:15 [ASN] P:8 [U] A:110 [GLY] D:8 [U] ✔
A:87 [ALA] P:10 [C] A:180 [ALA] D:10 [G] ✔
A:88 [LYS] P:10 [C] A:181 [LEU] D:10 [G] ✔
A:83 [ARG] P:8 [U] A:176 [GLU] D:8 [U] ✔
A:54 [GLN] P:9 [G] A:148 [PHE] D:9 [A] ✔
A:54 [GLN] P:10 [C] A:148 [PHE] D:10 [G] ✔
A:16 [ASN] P:8 [U] A:111 [GLY] D:8 [U] ✔
A:56 [PHE] P:10 [C] A:150 [PHE] D:10 [G] ✔
A:52 [ARG] P:9 [G] A:146 [ARG] D:9 [A] ✔
A:89 [THR] P:10 [C] A:182 [SER] D:10 [G] ✔
A:13 [TYR] P:10 [C] A:108 [PHE] D:10 [G] ❌ 6DCL_A_D
A:15 [ASN] P:9 [G] A:110 [GLY] D:9 [A] ❌ 6DCL_A_D
A:87 [ALA] P:11 [A] A:180 [ALA] D:11 [C] ❌ 6DCL_A_D
A:17 [LEU] P:9 [G] A:112 [ILE] D:9 [A] ❌ 6DCL_A_D
A:11 [THR] P:11 [A] A:106 [LYS] D:11 [C] ❌ 6DCL_A_D
A:53 [GLY] P:9 [G] A:147 [GLY] D:9 [A] ❌ 6DCL_A_D
A:51 [MET] P:9 [G] A:145 [LYS] D:9 [A] ❌ 6DCL_A_D
A:51 [MET] P:10 [C] A:145 [LYS] D:10 [G] ❌ 6DCL_A_D
A:51 [MET] P:11 [A] A:145 [LYS] D:11 [C] ❌ 6DCL_A_D
A:86 [TYR] P:10 [C] A:179 [LYS] D:10 [G] ❌ 6DCL_A_D
A:85 [GLN] P:10 [C] A:178 [ARG] D:10 [G] ❌ 6DCL_A_D
A:16 [ASN] P:9 [G] A:111 [GLY] D:9 [A] ❌ 6DCL_A_D
A:44 [LEU] P:11 [A] A:135 [GLU] D:11 [C] ❌ 6DCL_A_D
A:56 [PHE] P:11 [A] A:150 [PHE] D:11 [C] ❌ 6DCL_A_D
A:89 [THR] P:11 [A] A:182 [SER] D:11 [C] ❌ 6DCL_A_D
A:11 [THR] P:10 [C] A:106 [LYS] D:10 [G] ❌ 1URN_A_P
A:13 [TYR] P:8 [U] A:108 [PHE] D:8 [U] ❌ 1URN_A_P
A:17 [LEU] P:8 [U] A:112 [ILE] D:8 [U] ❌ 1URN_A_P
A:44 [LEU] P:10 [C] A:135 [GLU] D:10 [G] ❌ 1URN_A_P
A:52 [ARG] P:11 [A] A:146 [ARG] D:11 [C] ❌ 1URN_A_P
A:52 [ARG] P:8 [U] A:146 [ARG] D:8 [U] ❌ 1URN_A_P
A:52 [ARG] P:10 [C] A:146 [ARG] D:10 [G] ❌ 1URN_A_P
A:53 [GLY] P:8 [U] A:147 [GLY] D:8 [U] ❌ 1URN_A_P
A:54 [GLN] P:8 [U] A:148 [PHE] D:8 [U] ❌ 1URN_A_P
A:56 [PHE] P:9 [G] A:150 [PHE] D:9 [A] ❌ 1URN_A_P
A:85 [GLN] P:8 [U] A:178 [ARG] D:8 [U] ❌ 1URN_A_P
A:85 [GLN] P:9 [G] A:178 [ARG] D:9 [A] ❌ 1URN_A_P
A:86 [TYR] P:9 [G] A:179 [LYS] D:9 [A] ❌ 1URN_A_P
A:87 [ALA] P:9 [G] A:180 [ALA] D:9 [A] ❌ 1URN_A_P
A:88 [LYS] P:9 [G] A:181 [LEU] D:9 [A] ❌ 1URN_A_P
A:49 [LEU] P:7 [U] A:142 [SER] D:6 [A] ❌ 6DCL_A:142, 6DCL_D:6 no longer at interface
A:52 [ARG] P:7 [U] A:146 [ARG] D:6 [A] ❌ 6DCL_D:6 no longer at interface
A:5 [GLU] P:10 [C] A:99 [GLY] D:10 [G] ❌ 6DCL_A:99 no longer at interface
A:49 [LEU] P:9 [G] A:142 [SER] D:9 [A] ❌ 6DCL_A:142 no longer at interface
A:80 [LYS] P:8 [U] A:173 [HIS] D:8 [U] ❌ 6DCL_A:173 no longer at interface
A:46 [SER] P:10 [C] A:137 [MET] D:10 [G] ❌ 1URN_A:46 no longer at interface
A:46 [SER] P:11 [A] A:137 [MET] D:11 [C] ❌ 1URN_A:46 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.61 1.95 0.17 0.69 0.03 0.74 0.8 0.33 0.27 0.07 0.19


Other pairs involving 1URN_A_P or 6DCL_A_D

Total number of entries: 25

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 1URN_A_P 0.93 0.95 0.28 0.83 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1URN_A_P 5HO4_A_B 0.68 0.59 2.13 0.0 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1URN_A_P 7DCO_4_G 0.23 0.6 1.36 0.17 RNA-binding domain, RBD compare
1URN_A_P 5TF6_A_B 0.54 0.62 3.87 0.0 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
1URN_A_P 6DCL_A_D 0.33 0.61 1.95 0.17 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_X_G 0.42 0.64 2.53 0.12 RNA-binding domain, RBD compare
1URN_A_P 4PR6_A_B 0.93 0.94 0.27 0.83 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
1A9N_B_Q 6DCL_A_D 0.32 0.6 2.71 0.2 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
6CMN_A_D 6DCL_A_D 0.48 0.61 1.72 0.16 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
6DCL_A_D 6F4H_A_B 0.33 0.63 1.94 0.17 RNA-binding domain, RBD compare
6DCL_A_D 6SQN_A_X 0.28 0.63 1.96 0.13 RNA-binding domain, RBD compare
6DCL_A_D 6XH2_A_D 0.48 0.6 1.96 0.14 RNA-binding domain, RBD compare
6DCL_A_D 6F4G_B_C 0.32 0.61 2.78 0.26 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare