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All interfaces > All interologs > Interface groups > group141 > 1URN_A_P vs 7DCO_4_G

Interface analysis


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Licorice
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Common contacts -

1URN_A
1URN_P
7DCO_4
7DCO_G
Conserved?
A:13 [TYR] P:9 [G] 4:12 [TYR] G:481 [A] ✔
A:54 [GLN] P:9 [G] 4:52 [TYR] G:481 [A] ✔
A:44 [LEU] P:12 [C] 4:39 [LYS] G:483 [A] ✔
A:52 [ARG] P:9 [G] 4:50 [GLN] G:481 [A] ✔
A:87 [ALA] P:11 [A] 4:86 [VAL] G:482 [A] ❌ 7DCO_4_G
A:11 [THR] P:11 [A] 4:10 [THR] G:482 [A] ❌ 7DCO_4_G
A:44 [LEU] P:11 [A] 4:39 [LYS] G:482 [A] ❌ 7DCO_4_G
A:56 [PHE] P:11 [A] 4:54 [PHE] G:482 [A] ❌ 7DCO_4_G
A:11 [THR] P:12 [C] 4:10 [THR] G:483 [A] ❌ 1URN_A_P
A:44 [LEU] P:13 [U] 4:39 [LYS] G:484 [A] ❌ 1URN_A_P
A:47 [ARG] P:13 [U] 4:42 [LYS] G:484 [A] ❌ 1URN_A_P
A:48 [SER] P:13 [U] 4:43 [ASP] G:484 [A] ❌ 1URN_A_P
A:48 [SER] P:11 [A] 4:43 [ASP] G:482 [A] ❌ 1URN_A_P
A:52 [ARG] P:11 [A] 4:50 [GLN] G:482 [A] ❌ 1URN_A_P
A:54 [GLN] P:12 [C] 4:52 [TYR] G:483 [A] ❌ 1URN_A_P
A:54 [GLN] P:11 [A] 4:52 [TYR] G:482 [A] ❌ 1URN_A_P
A:56 [PHE] P:12 [C] 4:54 [PHE] G:483 [A] ❌ 1URN_A_P
A:56 [PHE] P:9 [G] 4:54 [PHE] G:481 [A] ❌ 1URN_A_P
A:85 [GLN] P:8 [U] 4:84 [ARG] G:480 [A] ❌ 1URN_A_P
A:85 [GLN] P:9 [G] 4:84 [ARG] G:481 [A] ❌ 1URN_A_P
A:86 [TYR] P:9 [G] 4:85 [GLN] G:481 [A] ❌ 1URN_A_P
A:87 [ALA] P:9 [G] 4:86 [VAL] G:481 [A] ❌ 1URN_A_P
A:19 [GLU] P:8 [U] 4:18 [PRO] G:480 [A] ❌ 7DCO_4:18 no longer at interface
A:19 [GLU] P:9 [G] 4:18 [PRO] G:481 [A] ❌ 7DCO_4:18 no longer at interface
A:15 [ASN] P:8 [U] 4:14 [GLY] G:480 [A] ❌ 7DCO_4:14 no longer at interface
A:15 [ASN] P:9 [G] 4:14 [GLY] G:481 [A] ❌ 7DCO_4:14 no longer at interface
A:17 [LEU] P:9 [G] 4:16 [ILE] G:481 [A] ❌ 7DCO_4:16 no longer at interface
A:49 [LEU] P:9 [G] 4:46 [LEU] G:481 [A] ❌ 7DCO_4:46 no longer at interface
A:53 [GLY] P:9 [G] 4:51 [GLY] G:481 [A] ❌ 7DCO_4:51 no longer at interface
A:83 [ARG] P:8 [U] 4:82 [LYS] G:480 [A] ❌ 7DCO_4:82 no longer at interface
A:51 [MET] P:9 [G] 4:49 [TYR] G:481 [A] ❌ 7DCO_4:49 no longer at interface
A:51 [MET] P:11 [A] 4:49 [TYR] G:482 [A] ❌ 7DCO_4:49 no longer at interface
A:80 [LYS] P:8 [U] 4:79 [ARG] G:480 [A] ❌ 7DCO_4:79 no longer at interface
A:16 [ASN] P:8 [U] 4:15 [ASN] G:480 [A] ❌ 7DCO_4:15 no longer at interface
A:16 [ASN] P:9 [G] 4:15 [ASN] G:481 [A] ❌ 7DCO_4:15 no longer at interface
A:27 [LYS] P:13 [U] 4:22 [LYS] G:484 [A] ❌ 1URN_A:27 no longer at interface
A:42 [ASP] P:12 [C] 4:37 [ARG] G:483 [A] ❌ 1URN_A:42 no longer at interface
A:45 [VAL] P:13 [U] 4:40 [TYR] G:484 [A] ❌ 1URN_A:45 no longer at interface
A:46 [SER] P:12 [C] 4:41 [PRO] G:483 [A] ❌ 1URN_A:46 no longer at interface
A:46 [SER] P:13 [U] 4:41 [PRO] G:484 [A] ❌ 1URN_A:46 no longer at interface
A:46 [SER] P:11 [A] 4:41 [PRO] G:482 [A] ❌ 1URN_A:46 no longer at interface
A:58 [ILE] P:12 [C] 4:56 [GLU] G:483 [A] ❌ 1URN_A:58 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RNA-binding domain, RBD 0.6 1.36 0.17 0.68 0.13 0.65 0.83 0.23 0.25 0.00 0.53


Other pairs involving 1URN_A_P or 7DCO_4_G

Total number of entries: 22

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DRZ_A_B 1URN_A_P 0.93 0.95 0.28 0.83 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1URN_A_P 5HO4_A_B 0.68 0.59 2.13 0.0 RNA-binding domain, RBD compare
1URN_A_P 4PKD_B_V 0.93 0.92 0.29 0.83 RNA-binding domain, RBD compare
1URN_A_P 4N0T_A_B 0.55 0.62 3.78 0.0 RNA-binding domain, RBD compare
1URN_A_P 7DCO_4_G 0.23 0.6 1.36 0.17 RNA-binding domain, RBD compare
1URN_A_P 5TF6_A_B 0.54 0.62 3.87 0.0 RNA-binding domain, RBD compare
1URN_A_P 5DDP_D_A 0.97 0.95 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_R_G 0.75 0.7 2.57 0.21 compare
1URN_A_P 6F4G_B_C 0.78 0.85 0.36 0.58 RNA-binding domain, RBD compare
1URN_A_P 6DCL_A_D 0.33 0.61 1.95 0.17 RNA-binding domain, RBD compare
1URN_A_P 2NZ4_A_P 0.94 0.92 0.36 0.83 RNA-binding domain, RBD compare
1URN_A_P 7DCO_X_G 0.42 0.64 2.53 0.12 RNA-binding domain, RBD compare
1URN_A_P 4PR6_A_B 0.93 0.94 0.27 0.83 RNA-binding domain, RBD compare
1URN_A_P 6F4H_A_B 0.95 0.94 0.32 0.72 RNA-binding domain, RBD compare
1URN_A_P 3MXH_P_R 0.97 0.87 0.95 0.78 RNA-binding domain, RBD compare
1A9N_B_Q 7DCO_4_G 0.43 0.58 1.31 0.17 RNA-binding domain, RBD compare
1A9N_B_Q 1URN_A_P 0.78 0.85 0.84 0.58 RNA-binding domain, RBD compare
6CMN_A_D 7DCO_4_G 0.65 0.58 1.84 0.12 RNA-binding domain, RBD compare
1M5O_C_B 1URN_A_P 0.96 0.93 0.59 0.93 RNA-binding domain, RBD compare
1SJ3_P_R 1URN_A_P 0.98 0.94 0.52 0.91 RNA-binding domain, RBD compare
6F4H_A_B 7DCO_4_G 0.35 0.61 1.28 0.17 RNA-binding domain, RBD compare