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All interfaces > All interologs > Interface groups > group29 > 7OF7_x_A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7OF7_x
7OF7_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
x:76 [ARG] A:2960 [U] 2.84 61.48
x:90 [SER] A:2980 [U] 4.31 A:2946 [A] 74.07
x:91 [CYS] A:2980 [U] 3.72 A:2946 [A] 79.31
x:91 [CYS] A:2981 [A] 4.63 A:2944 [C] 79.31
x:92 [PHE] A:2816 [G] 2.97 base/AA stacks 63.56
x:92 [PHE] A:2980 [U] 4.74 A:2946 [A] 63.56
x:92 [PHE] A:2981 [A] 4.14 A:2944 [C] 63.56
x:92 [PHE] A:3089 [A] 3.59 base/AA stacks 63.56
x:93 [HIS] A:3089 [A] 4.6 37.31
x:94 [SER] A:2938 [A] 3.14 A:2934 [G] 68.75
x:94 [SER] A:2939 [C] 3.36 68.75
x:95 [GLU] A:2938 [A] 3.19 A:2934 [G] 58.51
x:95 [GLU] A:2939 [C] 4.38 58.51
x:95 [GLU] A:2992 [G] 3.55 58.51
x:95 [GLU] A:2993 [U] 4.0 58.51
x:95 [GLU] A:3070 [G] 3.26 base:SC 58.51
x:95 [GLU] A:3071 [U] 2.38 sugar:SC 58.51
x:95 [GLU] A:3072 [U] 4.98 58.51
x:96 [PRO] A:2725 [A] 4.93 56.09
x:96 [PRO] A:2726 [C] 3.31 A:2937 [A] sugar:BB 56.09
x:96 [PRO] A:2937 [A] 4.96 A:2726 [C] 56.09
x:96 [PRO] A:2938 [A] 3.3 A:2934 [G] 56.09
x:96 [PRO] A:2939 [C] 3.68 56.09
x:96 [PRO] A:2992 [G] 3.06 56.09
x:96 [PRO] A:2993 [U] 3.31 56.09
x:97 [ARG] A:2724 [G] 3.65 41.17
x:97 [ARG] A:2725 [A] 3.37 41.17
x:97 [ARG] A:2726 [C] 4.0 A:2937 [A] 41.17
x:97 [ARG] A:2926 [A] 4.42 41.17
x:97 [ARG] A:2992 [G] 3.41 base/AA stacks 41.17
x:97 [ARG] A:3072 [U] 3.6 41.17
x:98 [LYS] A:2992 [G] 5.0 35.22
x:98 [LYS] A:3071 [U] 3.03 35.22
x:98 [LYS] A:3072 [U] 3.36 35.22
x:98 [LYS] A:3089 [A] 3.92 35.22
x:98 [LYS] A:3090 [G] 2.91 A:3078 [C] 35.22
x:99 [GLU] A:2727 [C] 3.85 A:2933 [G] 30.9
x:99 [GLU] A:2937 [A] 2.55 A:2726 [C] base:SC 30.9
x:99 [GLU] A:2938 [A] 3.53 A:2934 [G] 30.9
x:100 [PHE] A:2815 [OMG] 4.37 32.56
x:100 [PHE] A:3089 [A] 2.89 sugar:BB 32.56
x:101 [GLY] A:3089 [A] 3.77 68.33
x:101 [GLY] A:3090 [G] 4.21 A:3078 [C] 68.33
x:102 [GLY] A:3089 [A] 2.87 base:BB 59.8
x:103 [PRO] A:3089 [A] 3.62 86.21
x:120 [GLN] A:3130 [A] 3.3 A:3018 [A] 9.6
x:121 [GLN] A:3129 [A] 4.67 65.59
x:121 [GLN] A:3130 [A] 3.48 A:3018 [A] 65.59
x:121 [GLN] A:3131 [G] 3.01 A:3126 [C] 65.59
x:121 [GLN] A:3132 [G] 3.85 A:3125 [A] 65.59
x:123 [LYS] A:3128 [A] 3.57 58.38
x:123 [LYS] A:3129 [A] 3.87 58.38
x:128 [VAL] A:3016 [G] 4.54 A:2962 [C] 51.44
x:129 [LEU] A:2960 [U] 4.33 41.43
x:129 [LEU] A:3016 [G] 3.12 A:2962 [C] 41.43
x:130 [SER] A:2959 [G] 3.11 A:2965 [A] sugar:SC 40.79
x:130 [SER] A:2960 [U] 4.68 40.79
x:130 [SER] A:2965 [A] 4.34 A:2959 [G] 40.79
x:131 [ARG] A:2959 [G] 4.96 A:2965 [A] 28.04
x:142 [SER] A:2979 [U] 3.48 A:2947 [U] 50.77
x:142 [SER] A:2980 [U] 3.52 A:2946 [A] 50.77
x:143 [LYS] A:2994 [U] 2.82 A:3069 [A] sugar:SC 52.84
x:143 [LYS] A:2995 [G] 3.59 A:3067 [U] 52.84
x:143 [LYS] A:3041 [U] 4.7 52.84
x:143 [LYS] A:3042 [U] 2.95 base:BB 52.84
x:143 [LYS] A:3060 [C] 3.87 52.84
x:144 [ASN] A:3041 [U] 3.31 base:SC 41.63
x:144 [ASN] A:3042 [U] 3.42 41.63
x:144 [ASN] A:3043 [C] 4.19 A:3039 [OMU] 41.63
x:145 [CYS] A:3042 [U] 3.59 57.16
x:145 [CYS] A:3043 [C] 3.56 A:3039 [OMU] 57.16
x:146 [PHE] A:3043 [C] 2.43 A:3039 [OMU] base:BB, sugar:BB 43.98
x:146 [PHE] A:3044 [A] 3.5 A:3038 [U] 43.98
x:147 [GLY] A:3043 [C] 4.61 A:3039 [OMU] 97.0
x:147 [GLY] A:3044 [A] 3.85 A:3038 [U] 97.0
x:147 [GLY] A:3045 [A] 4.86 A:3037 [U] 97.0
x:148 [ARG] A:3043 [C] 4.98 A:3039 [OMU] 53.0
x:148 [ARG] A:3044 [A] 2.89 A:3038 [U] 53.0
x:148 [ARG] A:3045 [A] 3.77 A:3037 [U] 53.0
x:148 [ARG] A:3055 [U] 3.79 A:3003 [A] 53.0
x:149 [SER] A:3044 [A] 3.86 A:3038 [U] 54.25
x:149 [SER] A:3045 [A] 2.76 A:3037 [U] 54.25
x:193 [ARG] A:3090 [G] 4.63 A:3078 [C] 45.65
x:193 [ARG] A:3091 [G] 4.6 A:3077 [C] 45.65
x:196 [LEU] A:3089 [A] 4.39 49.59
x:196 [LEU] A:3090 [G] 3.6 A:3078 [C] 49.59
x:197 [ALA] A:3090 [G] 4.17 A:3078 [C] 73.22
x:198 [ASN] A:3079 [G] 3.03 A:3088 [C] base:SC, base:SC 57.62
x:198 [ASN] A:3080 [G] 3.77 A:3087 [C] sugar:SC 57.62
x:198 [ASN] A:3090 [G] 2.89 A:3078 [C] 57.62
x:201 [ARG] A:3079 [G] 3.46 A:3088 [C] 61.01
x:201 [ARG] A:3088 [C] 2.1 A:3079 [G] base:SC, base:SC, sugar:SC 61.01
x:201 [ARG] A:3089 [A] 2.8 sugar:BB 61.01
x:201 [ARG] A:3090 [G] 2.97 A:3078 [C] base/AA stacks 61.01
x:202 [ALA] A:2816 [G] 2.88 sugar:BB 59.94
x:202 [ALA] A:3089 [A] 3.5 59.94
x:204 [VAL] A:2816 [G] 4.03 22.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group29 7OF7_x_A x: Mitochondrial ribosome-associated gtpase 2, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) Q9H4K7 Obg GTP-binding protein N-terminal domain Bacterial large subunit ribosomal RNA ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7BL4_9_A 7OF7_x_A 0.71 0.97 2.76 0.24 Obg GTP-binding protein N-terminal domain Bacterial large subunit ribosomal RNA compare