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All interfaces > All interologs > Interface groups > group57 > 1YHQ_W_9

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

1YHQ_W
1YHQ_9
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
W:8 [ARG] 9:85 [A] 3.17 9:97 [U] 95.08
W:8 [ARG] 9:86 [G] 2.74 9:96 [C] 95.08
W:14 [HIS] 9:84 [G] 3.39 9:98 [C] 50.69
W:14 [HIS] 9:85 [A] 2.88 9:97 [U] 50.69
W:17 [ILE] 9:84 [G] 4.11 9:98 [C] 73.39
W:46 [ALA] 9:99 [U] 4.62 9:83 [G] 44.27
W:46 [ALA] 9:100 [G] 4.61 9:82 [U] 44.27
W:47 [LYS] 9:84 [G] 4.59 9:98 [C] 79.72
W:49 [ASN] 9:84 [G] 4.87 9:98 [C] 79.4
W:49 [ASN] 9:99 [U] 3.64 9:83 [G] 79.4
W:50 [ASP] 9:84 [G] 2.96 9:98 [C] base:SC, sugar:SC 82.48
W:50 [ASP] 9:85 [A] 3.04 9:97 [U] 82.48
W:50 [ASP] 9:98 [C] 4.7 9:84 [G] 82.48
W:51 [PHE] 9:84 [G] 4.64 9:98 [C] 60.42
W:51 [PHE] 9:85 [A] 3.66 9:97 [U] 60.42
W:128 [VAL] 9:86 [G] 4.98 9:96 [C] 74.99
W:129 [LYS] 9:86 [G] 3.11 9:96 [C] sugar:BB 92.09
W:129 [LYS] 9:87 [U] 2.69 92.09
W:129 [LYS] 9:88 [G] 4.87 9:95 [C] 92.09
W:130 [HIS] 9:86 [G] 3.7 9:96 [C] 52.54
W:130 [HIS] 9:88 [G] 2.52 9:95 [C] 52.54
W:131 [PRO] 9:98 [C] 3.31 9:84 [G] 53.43
W:133 [LYS] 9:98 [C] 3.55 9:84 [G] 35.04
W:133 [LYS] 9:99 [U] 2.69 9:83 [G] 35.04
W:134 [GLU] 9:97 [U] 3.13 9:85 [A] 17.41
W:134 [GLU] 9:98 [C] 3.67 9:84 [G] 17.41
W:138 [LEU] 9:85 [A] 4.56 9:97 [U] 85.26

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group57 1YHQ_W_9 W: 50s ribosomal protein l30p, Haloarcula marismortui (natural) 9: 5s ribosomal RNA, Haloarcula marismortui (natural) P14121 Ribosomal protein L30p/L7e 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_W_9 1YHQ_W_9 0.99 1.0 0.11 1.0 Ribosomal protein L30p/L7e 5S ribosomal RNA compare
1YHQ_W_9 7O7Y_BF_B7 0.74 0.85 1.14 0.18 Ribosomal protein L30p/L7e 5S ribosomal RNA compare
1YHQ_W_9 6AZ3_c_8 0.72 0.85 1.04 0.09 Ribosomal protein L30p/L7e 5S ribosomal RNA compare