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All interfaces > All interologs > Interface groups > group72 > 1VQ8_Q_0

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
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Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_Q
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Q:1 [PRO] 0:2298 [C] 4.8 0:2310 [G] 35.3
Q:1 [PRO] 0:2299 [G] 3.03 0:2308 [U] 35.3
Q:1 [PRO] 0:2300 [A] 3.08 0:2307 [A] base:BB 35.3
Q:1 [PRO] 0:2306 [U] 3.11 0:2301 [A] 35.3
Q:1 [PRO] 0:2307 [A] 3.15 0:2300 [A] 35.3
Q:2 [SER] 0:2295 [G] 4.9 0:2313 [C] 51.5
Q:2 [SER] 0:2296 [C] 3.2 0:2312 [G] 51.5
Q:2 [SER] 0:2297 [U] 2.61 0:2311 [A] base:SC 51.5
Q:2 [SER] 0:2298 [C] 3.61 0:2310 [G] 51.5
Q:2 [SER] 0:2299 [G] 3.98 0:2308 [U] 51.5
Q:2 [SER] 0:2310 [G] 4.15 0:2298 [C] 51.5
Q:2 [SER] 0:2311 [A] 4.33 0:2297 [U] 51.5
Q:3 [SER] 0:2295 [G] 3.77 0:2313 [C] 85.5
Q:3 [SER] 0:2296 [C] 2.6 0:2312 [G] 85.5
Q:3 [SER] 0:2297 [U] 4.99 0:2311 [A] 85.5
Q:4 [ASN] 0:2295 [G] 2.97 0:2313 [C] 48.7
Q:4 [ASN] 0:2296 [C] 3.66 0:2312 [G] 48.7
Q:4 [ASN] 0:2306 [U] 4.61 0:2301 [A] 48.7
Q:4 [ASN] 0:2390 [U] 3.85 0:2398 [A] 48.7
Q:4 [ASN] 0:2391 [C] 4.2 0:2397 [G] 48.7
Q:5 [GLY] 0:2295 [G] 3.12 0:2313 [C] 96.9
Q:5 [GLY] 0:2296 [C] 2.78 0:2312 [G] 96.9
Q:5 [GLY] 0:2424 [U] 3.92 0:2362 [A] 96.9
Q:6 [PRO] 0:2296 [C] 3.97 0:2312 [G] 19.2
Q:6 [PRO] 0:2389 [U] 4.6 0:2399 [G] 19.2
Q:6 [PRO] 0:2424 [U] 3.39 0:2362 [A] 19.2
Q:6 [PRO] 0:2425 [A] 4.1 19.2
Q:7 [LEU] 0:2296 [C] 3.31 0:2312 [G] 69.8
Q:7 [LEU] 0:2297 [U] 3.28 0:2311 [A] 69.8
Q:7 [LEU] 0:2363 [G] 3.72 0:2423 [C] 69.8
Q:7 [LEU] 0:2423 [C] 3.46 0:2363 [G] 69.8
Q:7 [LEU] 0:2424 [U] 3.31 0:2362 [A] sugar:BB 69.8
Q:8 [GLU] 0:2296 [C] 3.24 0:2312 [G] 65.0
Q:8 [GLU] 0:2297 [U] 3.51 0:2311 [A] 65.0
Q:8 [GLU] 0:2305 [A] 4.32 65.0
Q:8 [GLU] 0:2306 [U] 4.59 0:2301 [A] 65.0
Q:9 [GLY] 0:2296 [C] 4.85 0:2312 [G] 58.1
Q:9 [GLY] 0:2297 [U] 3.0 0:2311 [A] 58.1
Q:9 [GLY] 0:2298 [C] 4.35 0:2310 [G] 58.1
Q:10 [THR] 0:2297 [U] 3.53 0:2311 [A] 78.2
Q:11 [ARG] 0:1007 [A] 3.39 90.0
Q:11 [ARG] 0:1008 [C] 3.78 0:958 [G] 90.0
Q:11 [ARG] 0:1009 [U] 4.55 0:957 [A] 90.0
Q:11 [ARG] 0:2297 [U] 3.27 0:2311 [A] sugar:SC 90.0
Q:11 [ARG] 0:2298 [C] 3.38 0:2310 [G] 90.0
Q:11 [ARG] 0:2363 [G] 2.54 0:2423 [C] 90.0
Q:11 [ARG] 0:2364 [A] 3.07 0:2422 [U] 90.0
Q:12 [GLY] 0:953 [G] 3.83 38.6
Q:13 [LYS] 0:952 [G] 4.38 0:1015 [C] 42.4
Q:13 [LYS] 0:953 [G] 3.67 42.4
Q:13 [LYS] 0:2303 [A] 4.17 42.4
Q:13 [LYS] 0:2304 [G] 2.91 42.4
Q:14 [LEU] 0:2364 [A] 2.83 0:2422 [U] sugar:BB 50.6
Q:14 [LEU] 0:2365 [G] 3.95 0:2358 [U] 50.6
Q:15 [LYS] 0:1009 [U] 3.54 0:957 [A] 62.9
Q:15 [LYS] 0:2364 [A] 3.44 0:2422 [U] 62.9
Q:15 [LYS] 0:2365 [G] 3.51 0:2358 [U] 62.9
Q:16 [ASN] 0:2364 [A] 4.38 0:2422 [U] 76.5
Q:16 [ASN] 0:2365 [G] 2.84 0:2358 [U] 76.5
Q:16 [ASN] 0:2366 [C] 3.7 0:2357 [G] 76.5
Q:17 [LYS] 0:953 [G] 3.96 13.6
Q:18 [PRO] 0:1010 [C] 3.78 0.8
Q:20 [ASP] 0:2366 [C] 4.73 0:2357 [G] 40.6
Q:21 [ARG] 0:2353 [A] 3.22 base:SC 56.5
Q:21 [ARG] 0:2354 [A] 3.09 56.5
Q:21 [ARG] 0:2366 [C] 3.7 0:2357 [G] 56.5
Q:22 [GLY] 0:2366 [C] 2.62 0:2357 [G] 73.7
Q:22 [GLY] 0:2367 [A] 3.64 73.7
Q:23 [THR] 0:2366 [C] 3.62 0:2357 [G] 62.1
Q:23 [THR] 0:2367 [A] 2.74 62.1
Q:38 [LYS] 0:1019 [C] 3.38 0:948 [G] 58.7
Q:38 [LYS] 0:1020 [A] 3.86 0:947 [U] 58.7
Q:40 [HIS] 0:949 [U] 2.85 0:1018 [A] base:SC 40.4
Q:40 [HIS] 0:950 [G] 3.23 0:1017 [U] 40.4
Q:40 [HIS] 0:1018 [A] 4.32 0:949 [U] 40.4
Q:41 [LEU] 0:951 [A] 4.89 0:1016 [U] 88.1
Q:42 [LYS] 0:951 [A] 3.33 0:1016 [U] 27.6
Q:42 [LYS] 0:952 [G] 3.09 0:1015 [C] 27.6
Q:45 [PRO] 0:2365 [G] 3.25 0:2358 [U] sugar:BB 68.1
Q:46 [SER] 0:2365 [G] 3.54 0:2358 [U] 76.5
Q:46 [SER] 0:2366 [C] 2.57 0:2357 [G] 76.5
Q:46 [SER] 0:2370 [A] 2.77 base:BB 76.5
Q:47 [VAL] 0:2370 [A] 4.89 21.1
Q:48 [PRO] 0:2365 [G] 4.84 0:2358 [U] 56.7
Q:48 [PRO] 0:2370 [A] 3.46 56.7
Q:48 [PRO] 0:2422 [U] 4.32 0:2364 [A] 56.7
Q:49 [ASN] 0:2402 [A] 4.12 0:2386 [U] 42.6
Q:49 [ASN] 0:2403 [C] 3.24 0:2385 [G] 42.6
Q:49 [ASN] 0:2418 [G] 4.64 0:2409 [C] 42.6
Q:50 [GLY] 0:2402 [A] 3.37 0:2386 [U] 82.9
Q:50 [GLY] 0:2403 [C] 3.46 0:2385 [G] 82.9
Q:51 [ARG] 0:2402 [A] 3.65 0:2386 [U] sugar:BB 58.6
Q:53 [HIS] 0:2388 [C] 3.91 0:2400 [G] 83.2
Q:53 [HIS] 0:2389 [U] 3.56 0:2399 [G] 83.2
Q:55 [ARG] 0:2304 [G] 3.43 90.5
Q:55 [ARG] 0:2305 [A] 2.88 90.5
Q:55 [ARG] 0:2389 [U] 3.95 0:2399 [G] 90.5
Q:55 [ARG] 0:2390 [U] 3.09 0:2398 [A] 90.5
Q:55 [ARG] 0:2392 [C] 3.46 90.5
Q:56 [PHE] 0:2388 [C] 3.76 0:2400 [G] 78.7
Q:56 [PHE] 0:2389 [U] 3.6 0:2399 [G] 78.7
Q:57 [ASP] 0:951 [A] 3.87 0:1016 [U] 75.3
Q:57 [ASP] 0:952 [G] 4.99 0:1015 [C] 75.3
Q:57 [ASP] 0:2303 [A] 3.91 sugar:BB 75.3
Q:58 [GLY] 0:950 [G] 2.79 0:1017 [U] base:BB 91.7
Q:58 [GLY] 0:951 [A] 3.42 0:1016 [U] 91.7
Q:58 [GLY] 0:1018 [A] 3.58 0:949 [U] 91.7
Q:59 [GLN] 0:950 [G] 4.96 0:1017 [U] 61.2
Q:59 [GLN] 0:1018 [A] 3.04 0:949 [U] 61.2
Q:60 [THR] 0:950 [G] 4.89 0:1017 [U] 59.9
Q:60 [THR] 0:1018 [A] 2.73 0:949 [U] base:SC, sugar:BB 59.9
Q:60 [THR] 0:1019 [C] 3.4 0:948 [G] 59.9
Q:67 [GLN] 0:2385 [G] 3.34 0:2403 [C] 78.6
Q:67 [GLN] 0:2386 [U] 2.86 0:2402 [A] base:SC, sugar:SC 78.6
Q:67 [GLN] 0:2402 [A] 4.98 0:2386 [U] 78.6
Q:67 [GLN] 0:2403 [C] 2.77 0:2385 [G] base:SC, sugar:BB 78.6
Q:67 [GLN] 0:2404 [G] 3.36 0:2384 [U] 78.6
Q:68 [GLY] 0:2403 [C] 4.6 0:2385 [G] 98.7
Q:68 [GLY] 0:2404 [G] 3.44 0:2384 [U] 98.7
Q:68 [GLY] 0:2405 [C] 4.65 0:2383 [G] 98.7
Q:69 [ASP] 0:2403 [C] 4.46 0:2385 [G] 55.4
Q:69 [ASP] 0:2404 [G] 2.64 0:2384 [U] 55.4
Q:70 [ALA] 0:2403 [C] 3.59 0:2385 [G] 82.7
Q:70 [ALA] 0:2404 [G] 3.71 0:2384 [U] 82.7
Q:72 [LYS] 0:2386 [U] 4.46 0:2402 [A] 52.0
Q:76 [VAL] 0:1018 [A] 4.73 0:949 [U] 42.7
Q:76 [VAL] 0:1019 [C] 4.23 0:948 [G] 42.7
Q:77 [ASP] 0:2389 [U] 4.48 0:2399 [G] 63.8
Q:77 [ASP] 0:2392 [C] 2.79 sugar:SC 63.8
Q:77 [ASP] 0:2393 [C] 3.45 63.8
Q:78 [GLY] 0:2393 [C] 3.74 50.3
Q:78 [GLY] 0:2394 [A] 4.93 50.3
Q:79 [GLY] 0:2393 [C] 3.25 57.3
Q:79 [GLY] 0:2394 [A] 3.09 57.3
Q:80 [LYS] 0:2393 [C] 3.66 68.2
Q:80 [LYS] 0:2394 [A] 3.28 68.2
Q:80 [LYS] 0:2395 [A] 2.92 68.2
Q:81 [GLU] 0:2388 [C] 4.36 0:2400 [G] 3.0
Q:82 [LYS] 0:2387 [U] 4.89 0:2401 [A] 92.6
Q:82 [LYS] 0:2388 [C] 3.3 0:2400 [G] 92.6
Q:82 [LYS] 0:2389 [U] 2.64 0:2399 [G] 92.6
Q:82 [LYS] 0:2392 [C] 3.35 92.6
Q:82 [LYS] 0:2393 [C] 2.78 92.6
Q:83 [THR] 0:2387 [U] 2.53 0:2401 [A] sugar:BB 29.4
Q:83 [THR] 0:2388 [C] 3.09 0:2400 [G] 29.4
Q:84 [ILE] 0:2387 [U] 4.24 0:2401 [A] 63.0
Q:85 [ILE] 0:2386 [U] 4.62 0:2402 [A] 70.3
Q:85 [ILE] 0:2387 [U] 3.94 0:2401 [A] 70.3
Q:85 [ILE] 0:2402 [A] 4.4 0:2386 [U] 70.3
Q:85 [ILE] 0:2403 [C] 3.37 0:2385 [G] 70.3
Q:87 [THR] 0:2403 [C] 4.6 0:2385 [G] 48.9
Q:92 [ARG] 0:950 [G] 4.95 0:1017 [U] 57.7
Q:93 [ARG] 0:949 [U] 4.18 0:1018 [A] 39.7
Q:94 [GLN] 0:948 [G] 3.41 0:1019 [C] 14.5
Q:94 [GLN] 0:949 [U] 3.09 0:1018 [A] base:SC 14.5
Q:94 [GLN] 0:1018 [A] 4.57 0:949 [U] 14.5
Q:94 [GLN] 0:1019 [C] 2.55 0:948 [G] base:SC, sugar:SC 14.5
Q:94 [GLN] 0:1020 [A] 4.92 0:947 [U] 14.5
Q:95 [GLU] 0:948 [G] 2.58 0:1019 [C] base:SC, sugar:SC 7.3
Q:95 [GLU] 0:949 [U] 2.57 0:1018 [A] sugar:BB 7.3

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group72 1VQ8_Q_0 Q: 50s ribosomal protein l21e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P12734 SH3 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_Q_0 6AZ3_S_2 0.70 0.78 1.53 0.23 SH3 compare
1VQ8_Q_0 7O7Y_BT_B5 0.67 0.94 1.91 0.22 SH3 compare
1VQ8_Q_0 1YHQ_Q_0 0.99 1.0 0.21 1.0 SH3 Archaeal large subunit ribosomal RNA compare