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All interfaces > All interologs > Interface groups > group72 > 6AZ3_S_2

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_S
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
S:2 [VAL] 2:1059 [U] 4.9 2:1075 [A] 64.37
S:2 [VAL] 2:1060 [G] 4.39 2:1074 [C] 64.37
S:2 [VAL] 2:1061 [U] 2.94 2:1073 [G] 64.37
S:2 [VAL] 2:1062 [U] 3.25 2:1071 [A] 64.37
S:2 [VAL] 2:1063 [A] 3.65 2:1070 [A] 64.37
S:2 [VAL] 2:1069 [C] 4.57 2:1064 [C] 64.37
S:2 [VAL] 2:1070 [A] 4.88 2:1063 [A] 64.37
S:3 [HIS] 2:1058 [C] 3.24 2:1076 [G] 71.42
S:3 [HIS] 2:1059 [U] 3.23 2:1075 [A] 71.42
S:3 [HIS] 2:1060 [G] 3.87 2:1074 [C] 71.42
S:3 [HIS] 2:1061 [U] 3.64 2:1073 [G] 71.42
S:3 [HIS] 2:1062 [U] 4.79 2:1071 [A] 71.42
S:3 [HIS] 2:1073 [G] 4.55 2:1061 [U] 71.42
S:3 [HIS] 2:1074 [C] 4.13 2:1060 [G] 71.42
S:3 [HIS] 2:1075 [A] 3.36 2:1059 [U] 71.42
S:3 [HIS] 2:1076 [G] 3.35 2:1058 [C] base:SC 71.42
S:4 [SER] 2:1058 [C] 3.09 2:1076 [G] 89.91
S:4 [SER] 2:1059 [U] 3.0 2:1075 [A] 89.91
S:5 [TYR] 2:1058 [C] 3.11 2:1076 [G] 41.05
S:5 [TYR] 2:1059 [U] 3.84 2:1075 [A] 41.05
S:5 [TYR] 2:1069 [C] 3.47 2:1064 [C] 41.05
S:5 [TYR] 2:1070 [A] 3.64 2:1063 [A] 41.05
S:5 [TYR] 2:1153 [OMU] 3.55 2:1161 [G] 41.05
S:6 [GLY] 2:1058 [C] 3.17 2:1076 [G] 96.63
S:6 [GLY] 2:1059 [U] 3.1 2:1075 [A] 96.63
S:6 [GLY] 2:1153 [OMU] 3.87 2:1161 [G] 96.63
S:6 [GLY] 2:1186 [A2M] 4.02 96.63
S:7 [TYR] 2:1059 [U] 3.91 2:1075 [A] 37.38
S:7 [TYR] 2:1152 [U] 3.37 2:1162 [A] sugar:SC 37.38
S:7 [TYR] 2:1153 [OMU] 3.52 2:1161 [G] 37.38
S:7 [TYR] 2:1185 [C] 3.6 2:1126 [G] 37.38
S:7 [TYR] 2:1186 [A2M] 3.77 37.38
S:8 [LYS] 2:1059 [U] 2.99 2:1075 [A] 86.77
S:8 [LYS] 2:1060 [G] 4.15 2:1074 [C] 86.77
S:8 [LYS] 2:1126 [G] 4.48 2:1185 [C] 86.77
S:8 [LYS] 2:1184 [C] 3.03 2:1127 [C] base:SC 86.77
S:8 [LYS] 2:1185 [C] 3.53 2:1126 [G] 86.77
S:8 [LYS] 2:1186 [A2M] 4.91 86.77
S:9 [SER] 2:1059 [U] 3.54 2:1075 [A] 73.55
S:9 [SER] 2:1060 [G] 3.47 2:1074 [C] 73.55
S:10 [GLY] 2:1059 [U] 4.87 2:1075 [A] 60.93
S:10 [GLY] 2:1060 [G] 2.85 2:1074 [C] 60.93
S:10 [GLY] 2:1061 [U] 4.51 2:1073 [G] 60.93
S:10 [GLY] 2:1067 [G] 4.99 60.93
S:11 [THR] 2:1060 [G] 3.44 2:1074 [C] 94.1
S:12 [ARG] 2:1060 [G] 3.05 2:1074 [C] sugar:SC 96.81
S:12 [ARG] 2:1061 [U] 3.56 2:1073 [G] 96.81
S:12 [ARG] 2:1126 [G] 3.34 2:1185 [C] 96.81
S:12 [ARG] 2:1127 [C] 3.95 2:1184 [C] 96.81
S:13 [HIS] 2:1061 [U] 3.63 2:1073 [G] 28.38
S:14 [LEU] 2:1067 [G] 4.1 49.74
S:15 [PHE] 2:1127 [C] 2.7 2:1184 [C] sugar:BB 70.16
S:15 [PHE] 2:1128 [G] 4.45 2:1121 [C] 70.16
S:16 [ALA] 2:1127 [C] 3.5 2:1184 [C] 58.07
S:16 [ALA] 2:1128 [G] 3.47 2:1121 [C] 58.07
S:17 [LYS] 2:1127 [C] 4.32 2:1184 [C] 81.06
S:17 [LYS] 2:1128 [G] 2.87 2:1121 [C] 81.06
S:17 [LYS] 2:1129 [U] 3.33 2:1120 [A] 81.06
S:22 [HIS] 2:1128 [G] 3.38 2:1121 [C] 66.64
S:22 [HIS] 2:1129 [U] 3.06 2:1120 [A] 66.64
S:23 [GLY] 2:1129 [U] 2.62 2:1120 [A] 91.57
S:23 [GLY] 2:1130 [A] 4.69 91.57
S:24 [ALA] 2:1129 [U] 4.77 2:1120 [A] 1.79
S:46 [SER] 2:1127 [C] 3.93 2:1184 [C] 72.59
S:46 [SER] 2:1128 [G] 3.39 2:1121 [C] 72.59
S:47 [ALA] 2:1128 [G] 3.28 2:1121 [C] 77.04
S:47 [ALA] 2:1129 [U] 3.73 2:1120 [A] 77.04
S:47 [ALA] 2:1133 [A] 2.77 base:BB 77.04
S:48 [VAL] 2:1133 [A] 4.62 48.21
S:49 [ARG] 2:1126 [G] 4.99 2:1185 [C] 77.81
S:49 [ARG] 2:1127 [C] 3.08 2:1184 [C] base:SC, base:SC 77.81
S:49 [ARG] 2:1128 [G] 3.17 2:1121 [C] 77.81
S:49 [ARG] 2:1133 [A] 3.2 77.81
S:49 [ARG] 2:1184 [C] 2.97 2:1127 [C] 77.81
S:50 [GLU] 2:1164 [U] 4.6 2:1150 [A] 79.24
S:50 [GLU] 2:1165 [C] 3.91 2:1149 [G] 79.24
S:50 [GLU] 2:1180 [A] 3.39 2:1171 [U] 79.24
S:51 [GLY] 2:1164 [U] 3.18 2:1150 [A] 91.67
S:51 [GLY] 2:1165 [C] 4.01 2:1149 [G] 91.67
S:52 [MET] 2:1164 [U] 5.0 2:1150 [A] 87.3
S:54 [HIS] 2:1152 [U] 3.94 2:1162 [A] 82.74
S:54 [HIS] 2:1153 [OMU] 3.39 2:1161 [G] 82.74
S:54 [HIS] 2:1154 [C] 4.63 2:1159 [A] 82.74
S:55 [LYS] 2:1066 [C] 4.77 78.37
S:55 [LYS] 2:1067 [G] 4.04 78.37
S:55 [LYS] 2:1068 [A2M] 3.58 78.37
S:56 [TYR] 2:1066 [C] 4.09 61.69
S:56 [TYR] 2:1067 [G] 3.72 61.69
S:57 [TYR] 2:1152 [U] 3.28 2:1162 [A] 83.19
S:57 [TYR] 2:1153 [OMU] 2.75 2:1161 [G] 83.19
S:60 [ARG] 2:1066 [C] 2.34 base:SC, base:SC, sugar:SC 73.84
S:60 [ARG] 2:1067 [G] 4.91 73.84
S:65 [TRP] 2:1150 [A] 3.94 2:1164 [U] 47.83
S:68 [THR] 2:1165 [C] 2.7 2:1149 [G] sugar:SC 75.86
S:68 [THR] 2:1166 [G] 3.21 75.86
S:69 [PRO] 2:1166 [G] 3.85 71.16
S:69 [PRO] 2:1167 [A] 3.57 2:1146 [A] 71.16
S:70 [ARG] 2:1165 [C] 3.77 2:1149 [G] 75.97
S:70 [ARG] 2:1166 [G] 2.74 75.97
S:70 [ARG] 2:1178 [G] 3.39 2:1173 [C] 75.97
S:70 [ARG] 2:1179 [C] 3.23 2:1172 [G] 75.97
S:71 [GLY] 2:1165 [C] 3.44 2:1149 [G] 79.21
S:71 [GLY] 2:1166 [G] 3.71 79.21
S:72 [VAL] 2:1165 [C] 4.61 2:1149 [G] 76.2
S:78 [LYS] 2:1153 [OMU] 2.66 2:1161 [G] 90.2
S:78 [LYS] 2:1154 [C] 3.54 2:1159 [A] 90.2
S:78 [LYS] 2:1155 [C] 3.6 90.2
S:78 [LYS] 2:1157 [G] 3.3 base:SC 90.2
S:80 [VAL] 2:1157 [G] 3.57 81.57
S:81 [ARG] 2:1156 [A] 4.0 62.09
S:81 [ARG] 2:1157 [G] 4.9 62.09
S:83 [ARG] 2:1157 [G] 3.04 80.89
S:85 [LEU] 2:1157 [G] 3.79 54.32
S:87 [LYS] 2:1152 [U] 3.21 2:1162 [A] 94.73
S:87 [LYS] 2:1153 [OMU] 2.96 2:1161 [G] 94.73
S:87 [LYS] 2:1155 [C] 4.62 94.73
S:87 [LYS] 2:1157 [G] 2.96 base:SC 94.73
S:88 [ARG] 2:1151 [U] 2.71 2:1163 [A] sugar:BB 65.11
S:88 [ARG] 2:1152 [U] 4.26 2:1162 [A] 65.11
S:89 [ILE] 2:1151 [U] 3.63 2:1163 [A] 77.95
S:89 [ILE] 2:1152 [U] 3.78 2:1162 [A] 77.95
S:90 [CYS] 2:1150 [A] 4.25 2:1164 [U] 73.07
S:90 [CYS] 2:1151 [U] 4.28 2:1163 [A] 73.07
S:90 [CYS] 2:1164 [U] 2.86 2:1150 [A] sugar:BB 73.07
S:90 [CYS] 2:1165 [C] 3.65 2:1149 [G] 73.07
S:91 [VAL] 2:1164 [U] 4.39 2:1150 [A] 75.56
S:91 [VAL] 2:1165 [C] 3.72 2:1149 [G] 75.56
S:92 [ARG] 2:1165 [C] 3.64 2:1149 [G] 84.86
S:92 [ARG] 2:1179 [C] 3.79 2:1172 [G] 84.86

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group72 6AZ3_S_2 S: 60s ribosomal protein l21, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3Q8ICH0 SH3 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_Q_0 6AZ3_S_2 0.70 0.78 1.53 0.23 SH3 compare
6AZ3_S_2 7O7Y_BT_B5 0.79 0.91 1.52 0.42 SH3 Eukaryotic large subunit ribosomal RNA compare
1YHQ_Q_0 6AZ3_S_2 0.71 0.78 1.51 0.21 SH3 compare