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All interfaces > All interologs > Interface groups > group72 > 1VQ8_Q_0 vs 1YHQ_Q_0

Interface analysis


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Licorice
Surface

RNA

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Licorice
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Common contacts -

1VQ8_Q
1VQ8_0
1YHQ_Q
1YHQ_0
Conserved?
Q:82 [LYS] 0:2387 [U] Q:82 [LYS] 0:2387 [U] ✔
Q:82 [LYS] 0:2388 [C] Q:82 [LYS] 0:2388 [C] ✔
Q:82 [LYS] 0:2389 [U] Q:82 [LYS] 0:2389 [U] ✔
Q:82 [LYS] 0:2392 [C] Q:82 [LYS] 0:2392 [C] ✔
Q:82 [LYS] 0:2393 [C] Q:82 [LYS] 0:2393 [C] ✔
Q:9 [GLY] 0:2296 [C] Q:9 [GLY] 0:2296 [C] ✔
Q:9 [GLY] 0:2297 [U] Q:9 [GLY] 0:2297 [U] ✔
Q:9 [GLY] 0:2298 [C] Q:9 [GLY] 0:2298 [C] ✔
Q:10 [THR] 0:2297 [U] Q:10 [THR] 0:2297 [U] ✔
Q:8 [GLU] 0:2296 [C] Q:8 [GLU] 0:2296 [C] ✔
Q:8 [GLU] 0:2297 [U] Q:8 [GLU] 0:2297 [U] ✔
Q:8 [GLU] 0:2305 [A] Q:8 [GLU] 0:2305 [A] ✔
Q:8 [GLU] 0:2306 [U] Q:8 [GLU] 0:2306 [U] ✔
Q:94 [GLN] 0:948 [G] Q:94 [GLN] 0:948 [G] ✔
Q:94 [GLN] 0:949 [U] Q:94 [GLN] 0:949 [U] ✔
Q:94 [GLN] 0:1018 [A] Q:94 [GLN] 0:1018 [A] ✔
Q:94 [GLN] 0:1019 [C] Q:94 [GLN] 0:1019 [C] ✔
Q:94 [GLN] 0:1020 [A] Q:94 [GLN] 0:1020 [A] ✔
Q:81 [GLU] 0:2388 [C] Q:81 [GLU] 0:2388 [C] ✔
Q:14 [LEU] 0:2364 [A] Q:14 [LEU] 0:2364 [A] ✔
Q:14 [LEU] 0:2365 [G] Q:14 [LEU] 0:2365 [G] ✔
Q:83 [THR] 0:2387 [U] Q:83 [THR] 0:2387 [U] ✔
Q:83 [THR] 0:2388 [C] Q:83 [THR] 0:2388 [C] ✔
Q:69 [ASP] 0:2403 [C] Q:69 [ASP] 0:2403 [C] ✔
Q:69 [ASP] 0:2404 [G] Q:69 [ASP] 0:2404 [G] ✔
Q:51 [ARG] 0:2402 [A] Q:51 [ARG] 0:2402 [A] ✔
Q:41 [LEU] 0:951 [A] Q:41 [LEU] 0:951 [A] ✔
Q:95 [GLU] 0:948 [G] Q:95 [GLU] 0:948 [G] ✔
Q:95 [GLU] 0:949 [U] Q:95 [GLU] 0:949 [U] ✔
Q:60 [THR] 0:950 [G] Q:60 [THR] 0:950 [G] ✔
Q:60 [THR] 0:1018 [A] Q:60 [THR] 0:1018 [A] ✔
Q:60 [THR] 0:1019 [C] Q:60 [THR] 0:1019 [C] ✔
Q:55 [ARG] 0:2304 [G] Q:55 [ARG] 0:2304 [G] ✔
Q:55 [ARG] 0:2305 [A] Q:55 [ARG] 0:2305 [A] ✔
Q:55 [ARG] 0:2389 [U] Q:55 [ARG] 0:2389 [U] ✔
Q:55 [ARG] 0:2390 [U] Q:55 [ARG] 0:2390 [U] ✔
Q:55 [ARG] 0:2392 [C] Q:55 [ARG] 0:2392 [C] ✔
Q:85 [ILE] 0:2386 [U] Q:85 [ILE] 0:2386 [U] ✔
Q:85 [ILE] 0:2387 [U] Q:85 [ILE] 0:2387 [U] ✔
Q:85 [ILE] 0:2402 [A] Q:85 [ILE] 0:2402 [A] ✔
Q:85 [ILE] 0:2403 [C] Q:85 [ILE] 0:2403 [C] ✔
Q:45 [PRO] 0:2365 [G] Q:45 [PRO] 0:2365 [G] ✔
Q:2 [SER] 0:2295 [G] Q:2 [SER] 0:2295 [G] ✔
Q:2 [SER] 0:2296 [C] Q:2 [SER] 0:2296 [C] ✔
Q:2 [SER] 0:2297 [U] Q:2 [SER] 0:2297 [U] ✔
Q:2 [SER] 0:2298 [C] Q:2 [SER] 0:2298 [C] ✔
Q:2 [SER] 0:2299 [G] Q:2 [SER] 0:2299 [G] ✔
Q:2 [SER] 0:2310 [G] Q:2 [SER] 0:2310 [G] ✔
Q:2 [SER] 0:2311 [A] Q:2 [SER] 0:2311 [A] ✔
Q:1 [PRO] 0:2298 [C] Q:1 [PRO] 0:2298 [C] ✔
Q:1 [PRO] 0:2299 [G] Q:1 [PRO] 0:2299 [G] ✔
Q:1 [PRO] 0:2300 [A] Q:1 [PRO] 0:2300 [A] ✔
Q:1 [PRO] 0:2306 [U] Q:1 [PRO] 0:2306 [U] ✔
Q:1 [PRO] 0:2307 [A] Q:1 [PRO] 0:2307 [A] ✔
Q:17 [LYS] 0:953 [G] Q:17 [LYS] 0:953 [G] ✔
Q:72 [LYS] 0:2386 [U] Q:72 [LYS] 0:2386 [U] ✔
Q:48 [PRO] 0:2365 [G] Q:48 [PRO] 0:2365 [G] ✔
Q:48 [PRO] 0:2370 [A] Q:48 [PRO] 0:2370 [A] ✔
Q:48 [PRO] 0:2422 [U] Q:48 [PRO] 0:2422 [U] ✔
Q:93 [ARG] 0:949 [U] Q:93 [ARG] 0:949 [U] ✔
Q:77 [ASP] 0:2389 [U] Q:77 [ASP] 0:2389 [U] ✔
Q:77 [ASP] 0:2392 [C] Q:77 [ASP] 0:2392 [C] ✔
Q:77 [ASP] 0:2393 [C] Q:77 [ASP] 0:2393 [C] ✔
Q:40 [HIS] 0:949 [U] Q:40 [HIS] 0:949 [U] ✔
Q:40 [HIS] 0:950 [G] Q:40 [HIS] 0:950 [G] ✔
Q:40 [HIS] 0:1018 [A] Q:40 [HIS] 0:1018 [A] ✔
Q:3 [SER] 0:2295 [G] Q:3 [SER] 0:2295 [G] ✔
Q:3 [SER] 0:2296 [C] Q:3 [SER] 0:2296 [C] ✔
Q:3 [SER] 0:2297 [U] Q:3 [SER] 0:2297 [U] ✔
Q:15 [LYS] 0:1009 [U] Q:15 [LYS] 0:1009 [U] ✔
Q:15 [LYS] 0:2364 [A] Q:15 [LYS] 0:2364 [A] ✔
Q:15 [LYS] 0:2365 [G] Q:15 [LYS] 0:2365 [G] ✔
Q:84 [ILE] 0:2387 [U] Q:84 [ILE] 0:2387 [U] ✔
Q:68 [GLY] 0:2403 [C] Q:68 [GLY] 0:2403 [C] ✔
Q:68 [GLY] 0:2404 [G] Q:68 [GLY] 0:2404 [G] ✔
Q:68 [GLY] 0:2405 [C] Q:68 [GLY] 0:2405 [C] ✔
Q:23 [THR] 0:2366 [C] Q:23 [THR] 0:2366 [C] ✔
Q:23 [THR] 0:2367 [A] Q:23 [THR] 0:2367 [A] ✔
Q:6 [PRO] 0:2296 [C] Q:6 [PRO] 0:2296 [C] ✔
Q:6 [PRO] 0:2389 [U] Q:6 [PRO] 0:2389 [U] ✔
Q:6 [PRO] 0:2424 [U] Q:6 [PRO] 0:2424 [U] ✔
Q:6 [PRO] 0:2425 [A] Q:6 [PRO] 0:2425 [A] ✔
Q:11 [ARG] 0:1007 [A] Q:11 [ARG] 0:1007 [A] ✔
Q:11 [ARG] 0:1008 [C] Q:11 [ARG] 0:1008 [C] ✔
Q:11 [ARG] 0:1009 [U] Q:11 [ARG] 0:1009 [U] ✔
Q:11 [ARG] 0:2297 [U] Q:11 [ARG] 0:2297 [U] ✔
Q:11 [ARG] 0:2298 [C] Q:11 [ARG] 0:2298 [C] ✔
Q:11 [ARG] 0:2363 [G] Q:11 [ARG] 0:2363 [G] ✔
Q:11 [ARG] 0:2364 [A] Q:11 [ARG] 0:2364 [A] ✔
Q:4 [ASN] 0:2295 [G] Q:4 [ASN] 0:2295 [G] ✔
Q:4 [ASN] 0:2296 [C] Q:4 [ASN] 0:2296 [C] ✔
Q:4 [ASN] 0:2306 [U] Q:4 [ASN] 0:2306 [U] ✔
Q:4 [ASN] 0:2390 [U] Q:4 [ASN] 0:2390 [U] ✔
Q:4 [ASN] 0:2391 [C] Q:4 [ASN] 0:2391 [C] ✔
Q:70 [ALA] 0:2403 [C] Q:70 [ALA] 0:2403 [C] ✔
Q:70 [ALA] 0:2404 [G] Q:70 [ALA] 0:2404 [G] ✔
Q:80 [LYS] 0:2393 [C] Q:80 [LYS] 0:2393 [C] ✔
Q:80 [LYS] 0:2394 [A] Q:80 [LYS] 0:2394 [A] ✔
Q:80 [LYS] 0:2395 [A] Q:80 [LYS] 0:2395 [A] ✔
Q:76 [VAL] 0:1018 [A] Q:76 [VAL] 0:1018 [A] ✔
Q:76 [VAL] 0:1019 [C] Q:76 [VAL] 0:1019 [C] ✔
Q:50 [GLY] 0:2402 [A] Q:50 [GLY] 0:2402 [A] ✔
Q:50 [GLY] 0:2403 [C] Q:50 [GLY] 0:2403 [C] ✔
Q:46 [SER] 0:2365 [G] Q:46 [SER] 0:2365 [G] ✔
Q:46 [SER] 0:2366 [C] Q:46 [SER] 0:2366 [C] ✔
Q:46 [SER] 0:2370 [A] Q:46 [SER] 0:2370 [A] ✔
Q:42 [LYS] 0:951 [A] Q:42 [LYS] 0:951 [A] ✔
Q:42 [LYS] 0:952 [G] Q:42 [LYS] 0:952 [G] ✔
Q:49 [ASN] 0:2402 [A] Q:49 [ASN] 0:2402 [A] ✔
Q:49 [ASN] 0:2403 [C] Q:49 [ASN] 0:2403 [C] ✔
Q:49 [ASN] 0:2418 [G] Q:49 [ASN] 0:2418 [G] ✔
Q:87 [THR] 0:2403 [C] Q:87 [THR] 0:2403 [C] ✔
Q:78 [GLY] 0:2393 [C] Q:78 [GLY] 0:2393 [C] ✔
Q:78 [GLY] 0:2394 [A] Q:78 [GLY] 0:2394 [A] ✔
Q:38 [LYS] 0:1019 [C] Q:38 [LYS] 0:1019 [C] ✔
Q:38 [LYS] 0:1020 [A] Q:38 [LYS] 0:1020 [A] ✔
Q:58 [GLY] 0:950 [G] Q:58 [GLY] 0:950 [G] ✔
Q:58 [GLY] 0:951 [A] Q:58 [GLY] 0:951 [A] ✔
Q:58 [GLY] 0:1018 [A] Q:58 [GLY] 0:1018 [A] ✔
Q:53 [HIS] 0:2388 [C] Q:53 [HIS] 0:2388 [C] ✔
Q:53 [HIS] 0:2389 [U] Q:53 [HIS] 0:2389 [U] ✔
Q:16 [ASN] 0:2364 [A] Q:16 [ASN] 0:2364 [A] ✔
Q:16 [ASN] 0:2365 [G] Q:16 [ASN] 0:2365 [G] ✔
Q:16 [ASN] 0:2366 [C] Q:16 [ASN] 0:2366 [C] ✔
Q:79 [GLY] 0:2393 [C] Q:79 [GLY] 0:2393 [C] ✔
Q:79 [GLY] 0:2394 [A] Q:79 [GLY] 0:2394 [A] ✔
Q:18 [PRO] 0:1010 [C] Q:18 [PRO] 0:1010 [C] ✔
Q:56 [PHE] 0:2388 [C] Q:56 [PHE] 0:2388 [C] ✔
Q:56 [PHE] 0:2389 [U] Q:56 [PHE] 0:2389 [U] ✔
Q:13 [LYS] 0:952 [G] Q:13 [LYS] 0:952 [G] ✔
Q:13 [LYS] 0:953 [G] Q:13 [LYS] 0:953 [G] ✔
Q:13 [LYS] 0:2303 [A] Q:13 [LYS] 0:2303 [A] ✔
Q:13 [LYS] 0:2304 [G] Q:13 [LYS] 0:2304 [G] ✔
Q:21 [ARG] 0:2353 [A] Q:21 [ARG] 0:2353 [A] ✔
Q:21 [ARG] 0:2354 [A] Q:21 [ARG] 0:2354 [A] ✔
Q:21 [ARG] 0:2366 [C] Q:21 [ARG] 0:2366 [C] ✔
Q:59 [GLN] 0:950 [G] Q:59 [GLN] 0:950 [G] ✔
Q:59 [GLN] 0:1018 [A] Q:59 [GLN] 0:1018 [A] ✔
Q:5 [GLY] 0:2295 [G] Q:5 [GLY] 0:2295 [G] ✔
Q:5 [GLY] 0:2296 [C] Q:5 [GLY] 0:2296 [C] ✔
Q:5 [GLY] 0:2424 [U] Q:5 [GLY] 0:2424 [U] ✔
Q:7 [LEU] 0:2296 [C] Q:7 [LEU] 0:2296 [C] ✔
Q:7 [LEU] 0:2297 [U] Q:7 [LEU] 0:2297 [U] ✔
Q:7 [LEU] 0:2363 [G] Q:7 [LEU] 0:2363 [G] ✔
Q:7 [LEU] 0:2423 [C] Q:7 [LEU] 0:2423 [C] ✔
Q:7 [LEU] 0:2424 [U] Q:7 [LEU] 0:2424 [U] ✔
Q:12 [GLY] 0:953 [G] Q:12 [GLY] 0:953 [G] ✔
Q:57 [ASP] 0:951 [A] Q:57 [ASP] 0:951 [A] ✔
Q:57 [ASP] 0:2303 [A] Q:57 [ASP] 0:2303 [A] ✔
Q:22 [GLY] 0:2366 [C] Q:22 [GLY] 0:2366 [C] ✔
Q:22 [GLY] 0:2367 [A] Q:22 [GLY] 0:2367 [A] ✔
Q:67 [GLN] 0:2385 [G] Q:67 [GLN] 0:2385 [G] ✔
Q:67 [GLN] 0:2386 [U] Q:67 [GLN] 0:2386 [U] ✔
Q:67 [GLN] 0:2402 [A] Q:67 [GLN] 0:2402 [A] ✔
Q:67 [GLN] 0:2403 [C] Q:67 [GLN] 0:2403 [C] ✔
Q:67 [GLN] 0:2404 [G] Q:67 [GLN] 0:2404 [G] ✔
Q:57 [ASP] 0:952 [G] Q:57 [ASP] 0:952 [G] ❌ 1YHQ_Q_0
Q:21 [ARG] 0:2367 [A] Q:21 [ARG] 0:2367 [A] ❌ 1VQ8_Q_0
Q:77 [ASP] 0:2394 [A] Q:77 [ASP] 0:2394 [A] ❌ 1VQ8_Q_0
Q:84 [ILE] 0:2388 [C] Q:84 [ILE] 0:2388 [C] ❌ 1VQ8_Q_0
Q:9 [GLY] 0:2304 [G] Q:9 [GLY] 0:2304 [G] ❌ 1VQ8_Q_0
Q:17 [LYS] 0:1011 [C] Q:17 [LYS] 0:1011 [C] ❌ 1VQ8_0:1011 no longer at interface
Q:2 [SER] 0:2312 [G] Q:2 [SER] 0:2312 [G] ❌ 1VQ8_0:2312 no longer at interface
Q:47 [VAL] 0:2370 [A] Q:47 [VAL] 0:2370 [A] ❌ 1YHQ_Q:47 no longer at interface
Q:20 [ASP] 0:2366 [C] Q:20 [ASP] 0:2366 [C] ❌ 1YHQ_Q:20 no longer at interface
Q:92 [ARG] 0:950 [G] Q:92 [ARG] 0:950 [G] ❌ 1YHQ_Q:92 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
SH3 Archaeal large subunit ribosomal RNA 1.0 0.21 1.00 1.0 1.0 1.0 1.0 0.99 0.95 0.87 0.50


Other pairs involving 1VQ8_Q_0 or 1YHQ_Q_0

Total number of entries: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_Q_0 7O7Y_BT_B5 0.67 0.94 1.91 0.22 SH3 compare
1VQ8_Q_0 1YHQ_Q_0 0.99 1.0 0.21 1.0 SH3 Archaeal large subunit ribosomal RNA compare
1VQ8_Q_0 6AZ3_S_2 0.70 0.78 1.53 0.23 SH3 compare
1YHQ_Q_0 6AZ3_S_2 0.71 0.78 1.51 0.21 SH3 compare
1YHQ_Q_0 7O7Y_BT_B5 0.67 0.94 1.87 0.23 SH3 compare